6NRQ

Crystal structure of Dpr10 IG1 bound to DIP-alpha IG1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.174 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Molecular basis of synaptic specificity by immunoglobulin superfamily receptors in Drosophila.

Cheng, S.Ashley, J.Kurleto, J.D.Lobb-Rabe, M.Park, Y.J.Carrillo, R.A.Ozkan, E.

(2019) Elife 8: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Defective proboscis extension response 10, isoform A
A, C
113Drosophila melanogasterMutation(s): 0 
Gene Names: dpr10 (BcDNA:RE37920, CG14158, CG14159, CT33762, Dmel\CG32057, Dpr-10, Dpr10)
Find proteins for Q9VT83 (Drosophila melanogaster)
Go to UniProtKB:  Q9VT83
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Dpr-interacting protein alpha, isoform A
B, D
113Drosophila melanogasterMutation(s): 0 
Gene Names: DIP-alpha (32791, CG13019, CG13020, Dmel\CG32791)
Find proteins for Q9W4R3 (Drosophila melanogaster)
Go to UniProtKB:  Q9W4R3
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B, C
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MAN
Query on MAN

Download SDF File 
Download CCD File 
A, B
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
FUC
Query on FUC

Download SDF File 
Download CCD File 
A, B, C
ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
 Ligand Interaction
BMA
Query on BMA

Download SDF File 
Download CCD File 
A, B
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, D
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.174 
  • Space Group: P 1
  • Diffraction Data DOI: 
    10.15785/SBGRID/646 SBGrid
Unit Cell:
Length (Å)Angle (°)
a = 51.011α = 119.68
b = 53.551β = 103.77
c = 56.685γ = 92.88
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXrefinement
PHASERphasing
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and StrokeUnited StatesR01 NS097161

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release
  • Version 1.1: 2019-02-13
    Type: Data collection, Structure summary