6NRW

Crystal structure of Dpr1 IG1 bound to DIP-eta IG1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.212 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Molecular basis of synaptic specificity by immunoglobulin superfamily receptors in Drosophila.

Cheng, S.Ashley, J.Kurleto, J.D.Lobb-Rabe, M.Park, Y.J.Carrillo, R.A.Ozkan, E.

(2019) Elife 8: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DPR1
A, C
114Drosophila melanogasterMutation(s): 0 
Gene Names: dpr1 (dpr)
Find proteins for Q8T603 (Drosophila melanogaster)
Go to UniProtKB:  Q8T603
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Dpr-interacting protein eta, isoform B
B, D
112Drosophila melanogasterMutation(s): 0 
Gene Names: DIP-eta (14010, CT33567, Dmel\CG14010)
Find proteins for Q9VMN9 (Drosophila melanogaster)
Go to UniProtKB:  Q9VMN9
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
B, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
FUC
Query on FUC

Download SDF File 
Download CCD File 
A, B, C
ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
 Ligand Interaction
BMA
Query on BMA

Download SDF File 
Download CCD File 
B
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, D
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 74.084α = 90.00
b = 74.084β = 90.00
c = 235.445γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
PHASERphasing
PHENIXrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and StrokeUnited StatesR01 NS097161

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release