6NRR

Crystal structure of Dpr11 IG1 bound to DIP-gamma IG+IG2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.207 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Molecular basis of synaptic specificity by immunoglobulin superfamily receptors in Drosophila.

Cheng, S.Ashley, J.Kurleto, J.D.Lobb-Rabe, M.Park, Y.J.Carrillo, R.A.Ozkan, E.

(2019) Elife 8: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Defective proboscis extension response 11, isoform B
A
114Drosophila melanogasterMutation(s): 0 
Gene Names: dpr11 (BcDNA:GH22307, CG15181, CG15182, CG15183, CG31309, CT35098, Dmel\CG33202, Dpr-11, Dpr11)
Find proteins for Q8MRE6 (Drosophila melanogaster)
Go to UniProtKB:  Q8MRE6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Dpr-interacting protein gamma
B
213Drosophila melanogasterMutation(s): 0 
Gene Names: DIP-gamma (14521, anon-WO0140519.196, CT34248, Dmel\CG14521)
Find proteins for Q9VAR6 (Drosophila melanogaster)
Go to UniProtKB:  Q9VAR6
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
FUC
Query on FUC

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Download CCD File 
B
ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
 Ligand Interaction
BMA
Query on BMA

Download SDF File 
Download CCD File 
B
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

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Download CCD File 
B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 85.364α = 90.00
b = 85.364β = 90.00
c = 103.584γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHASERphasing
PHENIXrefinement
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and StrokeUnited StatesR01 NS097161

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release