Welcome
RCSB Protein Data Bank (RCSB PDB) enables breakthroughs in science and education by providing access and tools for exploration, visualization, and analysis of:
Experimentally-determined 3D structures from the Protein Data Bank (PDB) archive | |
Computed Structure Models (CSM) from AlphaFold DB and ModelArchive |
These data can be explored in context of external annotations providing a structural view of biology.
Features & Highlights
ls-lR index file to be removed July 12, 2023
Users are encouraged to transition to new inventory files for PDB entries, chemical reference data, and experimental data
Perform Improved Pairwise Structure Alignments
Simultaneously analyze and visualize 3D structure and 1D sequence alignments
Sequence Clustering Update
Sequence clustering at RCSB.org has been relaxed from 90% to 80%
Search for Structures By Date
Use Advanced Search to easily find structures based on the date of release or deposition
Find Structurally Similar Chains and Assemblies
Use Advanced Search to find structures similar to a polymer chain or assembly of interest
Upload Structure Files to Search the PDB
Find PDB entries and CSMs similar to your own predicted models, molecular dynamic trajectories, and any unpublished experimental structures.
Using KBase to access PDB Structures and CSMs
Learn about the protein structure-related tools, visualizations, and workflows that have been integrated into KBase
Removal of ls-lR index file from the PDB archive
Users are encouraged to transition to new files before July 12th 2023
Access Depositions Using ORCiD
Contact authors can log into OneDep using ORCiD authentication and access associated depositions
Search for Structural Motifs
Explore residue patterns that recur throughout the PDB using Mol* or Advanced Search
See new feature archive
Prepare Depositions Using New pdb_extract Features
pdb_extract now supports modern structure determination packages and enhanced data parsing. Use PDBj's CIF editor to easily provide metadata for single and multiple related entries.» 05/23/2023
Award-Winning Videos on Molecular Mechanisms of Targeted Cancer Therapies
Results from the latest RCSB PDB Video Challenge show how high school students are excellent science communicators» 05/16/2023
Education Corner: ACA Literacy Portal
The American Crystallographic Association is sponsoring a contest for members with prizes of $500 for videos explaining structural science. Deadline is June 15.» 05/09/2023
Beginner's Guide to PDB Structures and the PDBx/mmCIF
PDB-101 hosts an introductory guide to the PDBx/mmCIF file format and data dictionary used in all wwPDB data deposition, annotation, and archiving» 05/03/2023
Helen Berman Elected to National Academy of Sciences
The National Academy of Sciences announced today the election of 120 members and 23 international members in recognition of their distinguished and continuing achievements in original research» 05/02/2023
Vote Now for the Viewer's Choice Award
Watch videos on the Molecular Mechanisms of Targeted Cancer Therapies created by high school students and vote for your favorite before May 8.» 05/01/2023
Register Now for May 3 Virtual Crash Course: Understanding PDBx/mmCIF
Learn about PDBx/mmCIF basics, software tools for generating and working with PDBx/mmCIF files, and programmatic access for harvesting data» 04/30/2023
Annual Report Published
Download the 2022 Annual Report for an overview of recent RCSB PDB activities, including enabled access to ~1 million Computed Structure Models (CSMs) from AlphaFoldDB and RoseTTAFold» 04/26/2023
Poster Prize Awarded at #DiscoverBMB
The wwPDB Foundation made an award to Michael Quinteros (Wesleyan University) for the best poster in the category Proteins: Structure, Function and Biophysics» 04/24/2023
Molecule of the Month
Cellulases and Bioenergy
Powerful fungal enzymes break down cellulose during industrial production of ethanol from plant material.
Read MoreQuarterly News (see archive)
Issue 97 - April 2023
This issue highlights Spring Crash Courses; a milestone 200,000 PDB structures; searching Computed Structure Models; and more. April 2023 Issue
Annual Reports
2022 Annual Report
Download the 2022 Annual Report (PDF) for an overview of recent RCSB PDB activities, including enabled access to ~1 million Computed Structure Models (CSMs) from AlphaFoldDB and RoseTTAFold.
