A Structural View of Biology
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Deposition Preparation Tools
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Data Format Conversion
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3D Structure Viewers
View PDB structures in 3D using NGL from any entry's Structure Summary page.
Sequence & Structure Alignment
RCSB PDB's Comparison Tool calculates pairwise sequence (blast2seq, Needleman-Wunsch, and Smith-Waterman) and structure alignments (FATCAT, CE, Mammoth, TM-Align, TopMatch).
Comparisons can be made for any protein in the PDB archive and for customized or local files not in the PDB. Special features include support for both rigid-body and flexible alignments and detection of circular permutations.
Download: Coordinates & Experimental Data
Enter PDB IDs separated by comma or white space. Note: The Download Tool is launched as a stand-alone application using the Java Web Start protocol. More Download Help
Robo1 Ig1-4 crystals form 2
Crystal structure of the GluA2o LBD in complex with glutamate and LY451395
Cleavage and Structural Transitions during Maturation of Staphylococcus aureus Bacteriophage 80 alpha and SaPI...
Crystal structure of GH10 xylanase XYL10C from Bispora. sp MEY-1
Trypsin inhibitors for the treatment of pancreatitis - cpd 1
Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilus
Crystal structure of the influenza virus PA endonuclease in complex with inhibitor 9f (SRI-29835)
Crystal structure of the catalase-peroxidase from Neurospora crassa at 2.6 A
Atomic model for the dimeric FO region of mitochondrial ATP synthase.
Crystal structure of Microcystis aeruginosa PCC 7806 aspartate racemase in complex with L-aspartate
Features & Highlights
Implementation of PDB Entry Versioning and Better Revision History to Improve PDB Archive ManagementA new FTP repository, ftp-versioned.wwpdb.org, now hosts versioned structural model files in PDBx/mmCIF and PDBML formats.
Improved Text SearchingSimple text searches at rcsb.org are now easier and more accurate. Text searching from the top query bar has been redesigned and is now powered by the open source Apache Solr platform. Results are based on an indexing of PDBx/mmCIF data.
See new feature archive
This issue introduces the reviews 2017 milestones and publications, improved text searching, and implementation of versioning for PDB data files. In the Education Corner, RCSB PDB summer interns describe their journey to ABRCMS. » 01/16/2018
- Time-stamped Copies of the PDB Archive Available » 01/09/2018
- A Year of Antimicrobial Resistance » 01/02/2018
- Season's Greetings » 12/26/2017
- Access Irving Geis' Early Molecular Images in 3D » 12/19/2017
- Browse the Biology of Plants and More at PDB-101 » 12/12/2017
- Overview of PDB Validation Reports published in Structure » 12/05/2017
- Structural Databases as Teaching Tools » 11/28/2017
- New Video Answers "What is a Protein?" » 11/21/2017
- Postdocs and Developers: Join Our Team » 11/14/2017
Molecule of the Month
Quarterly News (see archive)
This issue introduces the reviews 2017 milestones and publications, improved text searching, and implementation of versioning for PDB data files. Winter 2018 Newsletter