6NRX

Crystal structure of DIP-eta IG1 homodimer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.232 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Molecular basis of synaptic specificity by immunoglobulin superfamily receptors in Drosophila.

Cheng, S.Ashley, J.Kurleto, J.D.Lobb-Rabe, M.Park, Y.J.Carrillo, R.A.Ozkan, E.

(2019) Elife 8: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dpr-interacting protein eta, isoform B
A, B
112Drosophila melanogasterMutation(s): 0 
Gene Names: DIP-eta (14010, CT33567, Dmel\CG14010)
Find proteins for Q9VMN9 (Drosophila melanogaster)
Go to UniProtKB:  Q9VMN9
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.232 
  • Space Group: C 1 2 1
  • Diffraction Data DOI: 
    10.15785/SBGRID/645 SBGrid
Unit Cell:
Length (Å)Angle (°)
a = 88.426α = 90.00
b = 67.133β = 128.82
c = 61.012γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
XDSdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and StrokeUnited StatesR01 NS097161

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release