6DY2

Guinea pig N-acylethanolamine-hydrolyzing acid amidase (NAAA) covalently bound to beta-lactam inhibitor ARN726


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.706 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.184 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Molecular mechanism of activation of the immunoregulatory amidase NAAA.

Gorelik, A.Gebai, A.Illes, K.Piomelli, D.Nagar, B.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: E10032-E10040


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
N-acylethanolamine acid amidase alpha-subunit
A, C
105Cavia porcellusMutation(s): 0 
Gene Names: NAAA
EC: 3.5.1.-
Find proteins for H0VCJ6 (Cavia porcellus)
Go to Gene View: NAAA
Go to UniProtKB:  H0VCJ6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
N-acylethanolamine acid amidase beta-subunit
B, D
233Cavia porcellusMutation(s): 0 
Gene Names: NAAA
EC: 3.5.1.-
Find proteins for H0VCJ6 (Cavia porcellus)
Go to Gene View: NAAA
Go to UniProtKB:  H0VCJ6
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
B, D
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, B, C, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
HJA
Query on HJA

Download SDF File 
Download CCD File 
B, D
(2S)-3-amino-2-{[(4-cyclohexylbutoxy)carbonyl]amino}propanethioic S-acid
C14 H26 N2 O3 S
PRQLPRBNQTXHJV-LBPRGKRZSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, D
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.706 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.184 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 71.885α = 90.00
b = 98.863β = 90.00
c = 117.761γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
HKL-2000data scaling
HKL-2000data reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health ResearchCanadaMOP-133535

Revision History 

  • Version 1.0: 2018-09-26
    Type: Initial release
  • Version 1.1: 2018-10-10
    Type: Data collection, Database references, Structure summary
  • Version 1.2: 2018-10-24
    Type: Data collection, Database references, Structure summary
  • Version 1.3: 2018-11-07
    Type: Data collection, Database references
  • Version 1.4: 2019-04-17
    Type: Data collection, Structure summary