6DXX

Human N-acylethanolamine-hydrolyzing acid amidase (NAAA) in complex with non-covalent benzothiazole-piperazine inhibitor ARN19702, in presence of Triton X-100


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Molecular mechanism of activation of the immunoregulatory amidase NAAA.

Gorelik, A.Gebai, A.Illes, K.Piomelli, D.Nagar, B.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: E10032-E10040


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
N-acylethanolamine-hydrolyzing acid amidase subunit alpha
A, C, E
107Homo sapiensMutation(s): 0 
Gene Names: NAAA (ASAHL, PLT)
EC: 3.5.1.-
Find proteins for Q02083 (Homo sapiens)
Go to Gene View: NAAA
Go to UniProtKB:  Q02083
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
N-acylethanolamine-hydrolyzing acid amidase subunit beta
B, D, F
234Homo sapiensMutation(s): 0 
Gene Names: NAAA (ASAHL, PLT)
EC: 3.5.1.-
Find proteins for Q02083 (Homo sapiens)
Go to Gene View: NAAA
Go to UniProtKB:  Q02083
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SCN
Query on SCN

Download SDF File 
Download CCD File 
C, D, F
THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
 Ligand Interaction
TON
Query on TON

Download SDF File 
Download CCD File 
A, C, E
2-{2-[4-(1,1,3,3-TETRAMETHYLBUTYL)PHENOXY]ETHOXY}ETHANOL
C18 H30 O3
LBCZOTMMGHGTPH-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, B, C, D, E, F
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
WTF
Query on WTF

Download SDF File 
Download CCD File 
B, D, F
[2-(ethylsulfonyl)phenyl][(2S)-4-(6-fluoro-1,3-benzothiazol-2-yl)-2-methylpiperazin-1-yl]methanone
C21 H22 F N3 O3 S2
UKQOLPNYRVPCBM-AWEZNQCLSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, D, E
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.206 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 76.610α = 90.00
b = 99.798β = 96.13
c = 92.756γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health ResearchCanadaMOP-133535

Revision History 

  • Version 1.0: 2018-09-26
    Type: Initial release
  • Version 1.1: 2018-10-10
    Type: Data collection, Database references, Structure summary
  • Version 1.2: 2018-10-24
    Type: Data collection, Database references, Structure summary
  • Version 1.3: 2018-11-07
    Type: Data collection, Database references
  • Version 1.4: 2019-04-17
    Type: Data collection, Structure summary