6DY3

Caenorhabditis elegans N-acylethanolamine-hydrolyzing acid amidase (NAAA) ortholog


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.168 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Molecular mechanism of activation of the immunoregulatory amidase NAAA.

Gorelik, A.Gebai, A.Illes, K.Piomelli, D.Nagar, B.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: E10032-E10040


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
N-acylethanolamine-hydrolyzing acid amidase alpha-subunit
A, C, E, G
113Caenorhabditis elegansMutation(s): 0 
EC: 3.5.1.-
Find proteins for Q9GUI1 (Caenorhabditis elegans)
Go to UniProtKB:  Q9GUI1
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
N-acylethanolamine-hydrolyzing acid amidase beta-subunit
B, D, F, H
234Caenorhabditis elegansMutation(s): 0 
EC: 3.5.1.-
Find proteins for Q9GUI1 (Caenorhabditis elegans)
Go to UniProtKB:  Q9GUI1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FUC
Query on FUC

Download SDF File 
Download CCD File 
B, F
ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
B, F
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.168 
  • Space Group: P 43
Unit Cell:
Length (Å)Angle (°)
a = 89.614α = 90.00
b = 89.614β = 90.00
c = 207.058γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHENIXrefinement
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health ResearchCanadaMOP-133535

Revision History 

  • Version 1.0: 2018-09-26
    Type: Initial release
  • Version 1.1: 2018-10-10
    Type: Data collection, Database references, Structure summary
  • Version 1.2: 2018-10-24
    Type: Data collection, Database references, Structure summary
  • Version 1.3: 2018-11-07
    Type: Data collection, Database references
  • Version 1.4: 2019-04-17
    Type: Data collection, Structure summary