6DY1

Rabbit N-acylethanolamine-hydrolyzing acid amidase (NAAA) with fatty acid (myristate), in presence of Triton X-100


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.998 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Molecular mechanism of activation of the immunoregulatory amidase NAAA.

Gorelik, A.Gebai, A.Illes, K.Piomelli, D.Nagar, B.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: E10032-E10040


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
N-acylethanolamine acid amidase alpha-subunit
A
107Oryctolagus cuniculusMutation(s): 0 
Gene Names: NAAA
EC: 3.5.1.-
Find proteins for G1T7U7 (Oryctolagus cuniculus)
Go to Gene View: NAAA
Go to UniProtKB:  G1T7U7
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
N-acylethanolamine acid amidase beta-subunit
B
232Oryctolagus cuniculusMutation(s): 0 
Gene Names: NAAA
EC: 3.5.1.-
Find proteins for G1T7U7 (Oryctolagus cuniculus)
Go to Gene View: NAAA
Go to UniProtKB:  G1T7U7
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MYR
Query on MYR

Download SDF File 
Download CCD File 
B
MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

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Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
TON
Query on TON

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Download CCD File 
A
2-{2-[4-(1,1,3,3-TETRAMETHYLBUTYL)PHENOXY]ETHOXY}ETHANOL
C18 H30 O3
LBCZOTMMGHGTPH-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.998 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.194 
  • Space Group: P 43 3 2
Unit Cell:
Length (Å)Angle (°)
a = 159.351α = 90.00
b = 159.351β = 90.00
c = 159.351γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health ResearchCanadaMOP-133535

Revision History 

  • Version 1.0: 2018-09-26
    Type: Initial release
  • Version 1.1: 2018-10-10
    Type: Data collection, Database references, Structure summary
  • Version 1.2: 2018-10-24
    Type: Data collection, Database references, Structure summary
  • Version 1.3: 2018-11-07
    Type: Data collection, Database references
  • Version 1.4: 2019-04-17
    Type: Data collection, Structure summary