6DXY

Murine N-acylethanolamine-hydrolyzing acid amidase (NAAA)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.851 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.167 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Molecular mechanism of activation of the immunoregulatory amidase NAAA.

Gorelik, A.Gebai, A.Illes, K.Piomelli, D.Nagar, B.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: E10032-E10040


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
N-acylethanolamine-hydrolyzing acid amidase subunit alpha
A, C
107Mus musculusMutation(s): 0 
Gene Names: Naaa (Asahl)
EC: 3.5.1.-
Find proteins for Q9D7V9 (Mus musculus)
Go to UniProtKB:  Q9D7V9
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
N-acylethanolamine-hydrolyzing acid amidase subunit beta
B, D
232Mus musculusMutation(s): 0 
Gene Names: Naaa (Asahl)
EC: 3.5.1.-
Find proteins for Q9D7V9 (Mus musculus)
Go to UniProtKB:  Q9D7V9
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
P33
Query on P33

Download SDF File 
Download CCD File 
D
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
HEPTAETHYLENE GLYCOL, PEG330
C14 H30 O8
XPJRQAIZZQMSCM-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, B, C, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
PG4
Query on PG4

Download SDF File 
Download CCD File 
B, D
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, D
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
OCS
Query on OCS
B, D
L-PEPTIDE LINKINGC3 H7 N O5 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.851 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.167 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 202.205α = 90.00
b = 202.205β = 90.00
c = 45.596γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
HKL-2000data reduction
HKL-2000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health ResearchCanadaMOP-133535

Revision History 

  • Version 1.0: 2018-09-26
    Type: Initial release
  • Version 1.1: 2018-10-10
    Type: Data collection, Database references, Structure summary
  • Version 1.2: 2018-10-24
    Type: Data collection, Database references, Structure summary
  • Version 1.3: 2018-11-07
    Type: Data collection, Database references
  • Version 1.4: 2019-04-17
    Type: Data collection, Structure summary