9KQQ | pdb_00009kqq

PSI-LHCI supercomplex binding with 8 Lhcas from C. subellipsoidea


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.06 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural study of the chlorophyll between Lhca8 and PsaJ in an Antarctica green algal photosystem I-LHCI supercomplex revealed by its atomic structure.

Tsai, P.C.Kato, K.Shen, J.R.Akita, F.

(2025) Biochim Biophys Acta Bioenerg 1866: 149543-149543

  • DOI: https://doi.org/10.1016/j.bbabio.2025.149543
  • Primary Citation of Related Structures:  
    9KQP, 9KQQ

  • PubMed Abstract: 

    Coccomyxa subellipsoidea is an oleaginous, non-motile unicellular green microalga isolated from Antarctica, and is an attractive candidate for CO 2 fixation and biomass production. C. subellipsoidea is the first polar green alga whose genome has been sequenced. Understanding the structure of photosystems from C. subellipsoidea can provide more information about the conversion of light energy into chemical energy under extreme environments. Photosystems I (PSI) is one of the two photosystems highly conserved from cyanobacteria to vascular plants, and associates with a large amount of outer light-harvesting complex (LHC) which absorb light energy and transfer them to the core complex. Here, we determined the structure of the PSI-10 LHCIs and PSI-8 LHCIs supercomplexes from C. subellipsoidea at 1.92 Å and 2.06 Å resolutions by cryo-electron microscopy, respectively. The supercomplex is similar to PSI-LHCI from other green algae, whereas a large amount of water molecules is observed in our structure because of the high-resolution map. Two novel chlorophylls (Chls), Chl a321 in Lhca4 and Chl a314 in Lhca8, are observed at the lumenal side in our structure, in which Lhca8-Chl a314 provides a potential excitation energy transfer (EET) pathway between the inner-belt of LHCI and the core at the lumenal side. A total of three major EET pathways from LHCIs to PSI core are proposed, and C. subellipsoidea might adapt to the extreme environment by transferring energy in these three different EET pathways instead of by two major pathways proposed in other organisms.


  • Organizational Affiliation
    • Research Institute for Interdisciplinary Science, and Graduate School of Environmental, Life, Natural Science and Technology, Okayama University, Okayama 700-8530, Japan.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I P700 chlorophyll a apoprotein A1751Coccomyxa subellipsoidea C-169Mutation(s): 0 
EC: 1.97.1.12
Membrane Entity: Yes 
UniProt
Find proteins for E9NPS7 (Coccomyxa subellipsoidea (strain C-169))
Explore E9NPS7 
Go to UniProtKB:  E9NPS7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE9NPS7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I P700 chlorophyll a apoprotein A2734Coccomyxa subellipsoidea C-169Mutation(s): 0 
EC: 1.97.1.12
Membrane Entity: Yes 
UniProt
Find proteins for E9NPS8 (Coccomyxa subellipsoidea (strain C-169))
Explore E9NPS8 
Go to UniProtKB:  E9NPS8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE9NPS8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I iron-sulfur center81Coccomyxa subellipsoidea C-169Mutation(s): 0 
EC: 1.97.1.12
Membrane Entity: Yes 
UniProt
Find proteins for E9NPV2 (Coccomyxa subellipsoidea (strain C-169))
Explore E9NPV2 
Go to UniProtKB:  E9NPV2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE9NPV2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit II, chloroplastic192Coccomyxa subellipsoidea C-169Mutation(s): 0 
UniProt
Find proteins for I0YVS7 (Coccomyxa subellipsoidea (strain C-169))
Explore I0YVS7 
Go to UniProtKB:  I0YVS7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI0YVS7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction centre subunit IV/PsaE71Coccomyxa subellipsoidea C-169Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for I0YQ13 (Coccomyxa subellipsoidea (strain C-169))
Explore I0YQ13 
Go to UniProtKB:  I0YQ13
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI0YQ13
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit III245Coccomyxa subellipsoidea C-169Mutation(s): 0 
UniProt
Find proteins for I0Z7V3 (Coccomyxa subellipsoidea (strain C-169))
Explore I0Z7V3 
Go to UniProtKB:  I0Z7V3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI0Z7V3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit V, chloroplastic138Coccomyxa subellipsoidea C-169Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for I0YTK4 (Coccomyxa subellipsoidea (strain C-169))
Explore I0YTK4 
Go to UniProtKB:  I0YTK4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI0YTK4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit VIIIH [auth I]36Coccomyxa subellipsoidea C-169Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for E9NPX1 (Coccomyxa subellipsoidea (strain C-169))
Explore E9NPX1 
Go to UniProtKB:  E9NPX1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE9NPX1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IXI [auth J]41Coccomyxa subellipsoidea C-169Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for E9NPW6 (Coccomyxa subellipsoidea (strain C-169))
Explore E9NPW6 
Go to UniProtKB:  E9NPW6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE9NPW6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
PSI-KJ [auth K]131Coccomyxa subellipsoidea C-169Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for I0YST3 (Coccomyxa subellipsoidea (strain C-169))
Explore I0YST3 
Go to UniProtKB:  I0YST3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI0YST3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit XIIK [auth M]31Coccomyxa subellipsoidea C-169Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for E9NPZ7 (Coccomyxa subellipsoidea (strain C-169))
Explore E9NPZ7 
Go to UniProtKB:  E9NPZ7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE9NPZ7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticL [auth a],
T [auth b]
229Coccomyxa subellipsoidea C-169Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for I0YQ45 (Coccomyxa subellipsoidea (strain C-169))
Explore I0YQ45 
Go to UniProtKB:  I0YQ45
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI0YQ45
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticM [auth 3]246Coccomyxa subellipsoidea C-169Mutation(s): 0 
UniProt
Find proteins for I0YPL4 (Coccomyxa subellipsoidea (strain C-169))
Explore I0YPL4 
Go to UniProtKB:  I0YPL4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI0YPL4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticN [auth 4]246Coccomyxa subellipsoidea C-169Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for I0Z7A7 (Coccomyxa subellipsoidea (strain C-169))
Explore I0Z7A7 
Go to UniProtKB:  I0Z7A7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI0Z7A7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticO [auth 5]274Coccomyxa subellipsoidea C-169Mutation(s): 0 
UniProt
Find proteins for I0Z2Y0 (Coccomyxa subellipsoidea (strain C-169))
Explore I0Z2Y0 
Go to UniProtKB:  I0Z2Y0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI0Z2Y0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticP [auth 6]272Coccomyxa subellipsoidea C-169Mutation(s): 0 
UniProt
Find proteins for I0Z7A6 (Coccomyxa subellipsoidea (strain C-169))
Explore I0Z7A6 
Go to UniProtKB:  I0Z7A6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI0Z7A6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticQ [auth 7]259Coccomyxa subellipsoidea C-169Mutation(s): 0 
UniProt
Find proteins for I0YQ44 (Coccomyxa subellipsoidea (strain C-169))
Explore I0YQ44 
Go to UniProtKB:  I0YQ44
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI0YQ44
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticR [auth 8]255Coccomyxa subellipsoidea C-169Mutation(s): 0 
UniProt
Find proteins for I0YQ46 (Coccomyxa subellipsoidea (strain C-169))
Explore I0YQ46 
Go to UniProtKB:  I0YQ46
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI0YQ46
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
PSI subunit VS [auth L]210Coccomyxa subellipsoidea C-169Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for I0Z687 (Coccomyxa subellipsoidea (strain C-169))
Explore I0Z687 
Go to UniProtKB:  I0Z687
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI0Z687
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 16 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
DGD (Subject of Investigation/LOI)
Query on DGD

Download Ideal Coordinates CCD File 
KC [auth B],
MJ [auth 7]
DIGALACTOSYL DIACYL GLYCEROL (DGDG)
C51 H96 O15
LDQFLSUQYHBXSX-HXXRYREZSA-N
CHL (Subject of Investigation/LOI)
Query on CHL

Download Ideal Coordinates CCD File 
AB [auth A]
AC [auth A]
AD [auth B]
AE [auth B]
AH [auth 4]
AB [auth A],
AC [auth A],
AD [auth B],
AE [auth B],
AH [auth 4],
AI [auth 5],
AJ [auth 6],
AK [auth 7],
AL [auth 8],
BB [auth A],
BD [auth B],
BH [auth 4],
BI [auth 5],
BJ [auth 6],
BK [auth 7],
BL [auth 8],
CB [auth A],
CD [auth B],
CH [auth 4],
CI [auth 5],
CJ [auth 6],
CK [auth 7],
CL [auth 8],
DB [auth A],
DD [auth B],
DG [auth 3],
DH [auth 4],
DI [auth 5],
DJ [auth 6],
DK [auth 7],
DL [auth 8],
EB [auth A],
ED [auth B],
EG [auth 3],
EH [auth 4],
EI [auth 5],
EJ [auth 6],
EL [auth 8],
FB [auth A],
FD [auth B],
FG [auth 3],
FH [auth 4],
FI [auth 5],
FJ [auth 6],
GB [auth A],
GD [auth B],
GG [auth 3],
GH [auth 4],
GI [auth 5],
HB [auth A],
HD [auth B],
HG [auth 3],
HH [auth 4],
HI [auth 5],
HL [auth L],
IB [auth A],
ID [auth B],
IF [auth a],
IG [auth 3],
IH [auth 4],
II [auth 5],
IL [auth L],
JA [auth A],
JB [auth A],
JD [auth B],
JF [auth a],
JG [auth 3],
JH [auth 4],
KA [auth A],
KB [auth A],
KD [auth B],
KE [auth F],
KF [auth a],
KG [auth 3],
KH [auth 4],
KI [auth 5],
LA [auth A],
LB [auth A],
LD [auth B],
LE [auth F],
LF [auth a],
LG [auth 3],
MA [auth A],
MB [auth A],
MC [auth B],
MD [auth B],
MF [auth a],
MG [auth 3],
ML [auth b],
NA [auth A],
NB [auth A],
NC [auth B],
ND [auth B],
NF [auth a],
NG [auth 3],
NL [auth b],
OA [auth A],
OB [auth A],
OC [auth B],
OD [auth B],
OF [auth a],
OG [auth 3],
OL [auth b],
PA [auth A],
PB [auth A],
PC [auth B],
PD [auth B],
PF [auth a],
PG [auth 3],
PK [auth 8],
PL [auth b],
QA [auth A],
QB [auth A],
QC [auth B],
QD [auth B],
QF [auth a],
QG [auth 3],
QI [auth 6],
QJ [auth 7],
QK [auth 8],
QL [auth b],
RA [auth A],
RB [auth A],
RC [auth B],
RD [auth B],
RF [auth a],
RI [auth 6],
RJ [auth 7],
RK [auth 8],
RL [auth b],
SA [auth A],
SB [auth A],
SC [auth B],
SD [auth B],
SE [auth J],
SF [auth a],
SH [auth 5],
SI [auth 6],
SJ [auth 7],
SK [auth 8],
SL [auth b],
TA [auth A],
TB [auth A],
TC [auth B],
TD [auth B],
TF [auth a],
TH [auth 5],
TI [auth 6],
TJ [auth 7],
TK [auth 8],
TL [auth b],
UA [auth A],
UB [auth A],
UC [auth B],
UD [auth B],
UF [auth a],
UG [auth 4],
UH [auth 5],
UI [auth 6],
UJ [auth 7],
UK [auth 8],
UL [auth b],
VA [auth A],
VB [auth A],
VC [auth B],
VD [auth B],
VF [auth a],
VG [auth 4],
VH [auth 5],
VI [auth 6],
VJ [auth 7],
VK [auth 8],
VL [auth b],
WA [auth A],
WB [auth A],
WC [auth B],
WD [auth B],
WE [auth K],
WG [auth 4],
WH [auth 5],
WI [auth 6],
WJ [auth 7],
WK [auth 8],
WL [auth b],
XA [auth A],
XB [auth A],
XC [auth B],
XD [auth B],
XE [auth K],
XG [auth 4],
XH [auth 5],
XI [auth 6],
XJ [auth 7],
XK [auth 8],
XL [auth b],
YA [auth A],
YB [auth A],
YC [auth B],
YD [auth B],
YE [auth K],
YG [auth 4],
YH [auth 5],
YI [auth 6],
YJ [auth 7],
YK [auth 8],
YL [auth b],
ZA [auth A],
ZB [auth A],
ZC [auth B],
ZD [auth B],
ZE [auth K],
ZG [auth 4],
ZH [auth 5],
ZI [auth 6],
ZJ [auth 7],
ZK [auth 8],
ZL [auth b]
CHLOROPHYLL B
C55 H70 Mg N4 O6
MWVCRINOIIOUAU-UYSPMESUSA-M
CL0 (Subject of Investigation/LOI)
Query on CL0

Download Ideal Coordinates CCD File 
IA [auth A]CHLOROPHYLL A ISOMER
C55 H72 Mg N4 O5
VIQFHHZSLDFWDU-DVXFRRMCSA-M
SQD (Subject of Investigation/LOI)
Query on SQD

Download Ideal Coordinates CCD File 
FK [auth 8]1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
C41 H78 O12 S
RVUUQPKXGDTQPG-JUDHQOGESA-N
LMG (Subject of Investigation/LOI)
Query on LMG

Download Ideal Coordinates CCD File 
CF [auth a],
GJ [auth 7],
LK [auth 8],
NE [auth J],
QE [auth J]
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
C45 H86 O10
DCLTVZLYPPIIID-CVELTQQQSA-N
PTY (Subject of Investigation/LOI)
Query on PTY

Download Ideal Coordinates CCD File 
QH [auth 5]PHOSPHATIDYLETHANOLAMINE
C40 H80 N O8 P
NJGIRBISCGPRPF-KXQOOQHDSA-N
LHG (Subject of Investigation/LOI)
Query on LHG

Download Ideal Coordinates CCD File 
DA [auth A]
EA [auth A]
FA [auth A]
GF [auth a]
HJ [auth 7]
DA [auth A],
EA [auth A],
FA [auth A],
GF [auth a],
HJ [auth 7],
JC [auth B],
JI [auth 5],
JK [auth 8],
KL [auth b],
LJ [auth 7],
PH [auth 5],
TG [auth 4]
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
C38 H75 O10 P
BIABMEZBCHDPBV-MPQUPPDSSA-N
DGA (Subject of Investigation/LOI)
Query on DGA

Download Ideal Coordinates CCD File 
KK [auth 8]DIACYL GLYCEROL
C39 H76 O5
UHUSDOQQWJGJQS-QNGWXLTQSA-N
XAT (Subject of Investigation/LOI)
Query on XAT

Download Ideal Coordinates CCD File 
KJ [auth 7](3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
C40 H56 O4
SZCBXWMUOPQSOX-WVJDLNGLSA-N
AXT (Subject of Investigation/LOI)
Query on AXT

Download Ideal Coordinates CCD File 
EF [auth a]ASTAXANTHIN
C40 H52 O4
MQZIGYBFDRPAKN-UWFIBFSHSA-N
LUT (Subject of Investigation/LOI)
Query on LUT

Download Ideal Coordinates CCD File 
AG [auth 3]
DF [auth a]
FE [auth F]
FF [auth a]
HK [auth 8]
AG [auth 3],
DF [auth a],
FE [auth F],
FF [auth a],
HK [auth 8],
IK [auth 8],
JJ [auth 7],
JL [auth b],
LL [auth b],
NH [auth 5],
NI [auth 6],
OH [auth 5],
OI [auth 6],
PE [auth J],
RG [auth 4],
SG [auth 4],
ZF [auth 3]
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
C40 H56 O2
KBPHJBAIARWVSC-NSIPBSJQSA-N
BCR (Subject of Investigation/LOI)
Query on BCR

Download Ideal Coordinates CCD File 
AA [auth A]
BF [auth M]
DC [auth B]
DE [auth F]
EC [auth B]
AA [auth A],
BF [auth M],
DC [auth B],
DE [auth F],
EC [auth B],
FC [auth B],
FL [auth L],
GC [auth B],
GK [auth 8],
GL [auth L],
HC [auth B],
IC [auth B],
IJ [auth 7],
ME [auth I],
MH [auth 5],
MI [auth 6],
OE [auth J],
UE [auth K],
VE [auth K],
W [auth A],
WF [auth 3],
X [auth A],
XF [auth 3],
Y [auth A],
YF [auth 3],
Z [auth A]
BETA-CAROTENE
C40 H56
OENHQHLEOONYIE-JLTXGRSLSA-N
LMT (Subject of Investigation/LOI)
Query on LMT

Download Ideal Coordinates CCD File 
BA [auth A]
CA [auth A]
EE [auth F]
LC [auth B]
LI [auth 5]
BA [auth A],
CA [auth A],
EE [auth F],
LC [auth B],
LI [auth 5],
NJ [auth 7],
RH [auth 5]
DODECYL-BETA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-QKMCSOCLSA-N
PQN (Subject of Investigation/LOI)
Query on PQN

Download Ideal Coordinates CCD File 
CC [auth B],
U [auth A]
PHYLLOQUINONE
C31 H46 O2
MBWXNTAXLNYFJB-NKFFZRIASA-N
SF4 (Subject of Investigation/LOI)
Query on SF4

Download Ideal Coordinates CCD File 
BE [auth C],
CE [auth C],
V [auth A]
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
UNL (Subject of Investigation/LOI)
Query on UNL

Download Ideal Coordinates CCD File 
AF [auth M]
BC [auth A]
BG [auth 3]
CG [auth 3]
EK [auth 7]
AF [auth M],
BC [auth A],
BG [auth 3],
CG [auth 3],
EK [auth 7],
GA [auth A],
GE [auth F],
HA [auth A],
HE [auth F],
HF [auth a],
IE [auth F],
JE [auth F],
LH [auth 4],
MK [auth 8],
NK [auth 8],
OJ [auth 7],
OK [auth 8],
PI [auth 6],
PJ [auth 7],
RE [auth J],
TE [auth K]
Unknown ligand
LJBDFODJNLIPKO-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.06 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)JapanJP22H04916

Revision History  (Full details and data files)

  • Version 1.0: 2025-02-26
    Type: Initial release