8DBV

E. coli ATP synthase imaged in 10mM MgATP State3 "down


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP.

Sobti, M.Zeng, Y.C.Walshe, J.L.Brown, S.H.J.Ishmukhametov, R.Stewart, A.G.

(2023) Commun Biol 6: 26-26

  • DOI: 10.1038/s42003-023-04414-z
  • Primary Citation of Related Structures:  
    8DBP, 8DBQ, 8DBR, 8DBS, 8DBT, 8DBU, 8DBV, 8DBW

  • PubMed Abstract: 
  • F 1 F o ATP synthase functions as a biological generator and makes a major contribution to cellular energy production. Proton flow generates rotation in the F o motor that is transferred to the F 1 motor to catalyze ATP production, with flexible F 1 /F o coupling required for efficient catalysis ...

    F 1 F o ATP synthase functions as a biological generator and makes a major contribution to cellular energy production. Proton flow generates rotation in the F o motor that is transferred to the F 1 motor to catalyze ATP production, with flexible F 1 /F o coupling required for efficient catalysis. F 1 F o ATP synthase can also operate in reverse, hydrolyzing ATP and pumping protons, and in bacteria this function can be regulated by an inhibitory ε subunit. Here we present cryo-EM data showing E. coli F 1 F o ATP synthase in different rotational and inhibited sub-states, observed following incubation with 10 mM MgATP. Our structures demonstrate how structural transitions within the inhibitory ε subunit induce torsional movement in the central stalk, thereby enabling its rotation within the F ο motor. This highlights the importance of the central rotor for flexible coupling of the F 1 and F o motors and provides further insight into the regulatory mechanism mediated by subunit ε.


    Organizational Affiliation

    School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Sydney, NSW, Australia. a.stewart@victorchang.edu.au.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit alphaA, B, C513Escherichia coliMutation(s): 0 
Gene Names: atpAECLG_02126
EC: 7.1.2.2
UniProt
Find proteins for A0A7U9G3U3 (Escherichia coli TA271)
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UniProt GroupA0A7U9G3U3
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit betaD, E, F460Escherichia coliMutation(s): 0 
Gene Names: atpDEWT59_16525WLH_03015
EC: 7.1.2.2
UniProt
Find proteins for A0A192CEZ8 (Escherichia coli O25b:H4)
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UniProt GroupA0A192CEZ8
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase gamma chainG287Escherichia coliMutation(s): 0 
Gene Names: 
atpGatpG_1A5U30_003290A6592_18305A8499_003851A8502_003955A9X72_25275AAG43_003026AAG80_004738AAS29_003449ACN68_12800ACU57_03275AF998_003408AM464_11940APX88_23995AT335_004102AT845_000768AW118_21725AW119_07640AWP47_06340B6R12_004264B6R15_003154B6R31_004850B6R48_003395B6R87_004916BANRA_00246BANRA_04799BEA19_15290BER14_24310BF481_004026BG944_002342BGM66_001358BHS81_22280BJI68_21495BJJ90_26485BK292_20080BK383_23390BKL28_001431BMT49_22370BMT50_09765BMT91_10625BO068_002400BOB65_002788BON63_19115BON64_06055BON66_26890BON68_19975BON69_17450BON72_01100BON75_22045BON76_09175BON80_03550BON81_25250BON82_25505BON83_15575BON84_00135BON86_07730BON87_04115BON88_19125BON89_05735BON90_04545BON92_06025BON95_10845BON96_19380BON97_15960BON98_14785BR158_003957BR331_09110BRV02_002572BRV34_001508BRV41_002028BTB68_001535BTQ06_19330BUO55_001867BvCmsHHP019_05385BvCmsHHP056_00159BvCmsKSNP073_00088BVL39_06815BXT93_21170BZL69_24175C0P57_002352C1Q91_001801C2121_002372C2M16_19985C2R31_003577C3F40_17015C5N07_23100C9114_08795C9E67_00045C9Z68_15835CA593_07325CCS08_08895CCV12_002411CDC27_20215CDL36_13060CDL37_07525CF22_002133CG831_001092CHM61_003636CQ986_004529CR538_25560CR628_001673CSE52_003589CTR35_001178CWS33_22510CX690_003323CX938_001099CXJ73_003749CY655_23810D0X26_21565D1H34_003056D3G36_11035D3Y67_00135D4N09_17390D4U49_15530D9D43_11335D9E34_14495D9E49_10970D9H94_18005D9J03_09360D9J61_13700DAH18_20330DAH19_18295DAH20_24015DAH21_17730DAH23_18130DAH24_17665DAH25_17920DAH26_16965DAH31_22985DAH33_22055DAH34_09130DAH35_20680DAH37_15345DAH38_15030DAH40_17030DAH42_13480DAH43_16430DAH45_16810DAH46_15650DAH47_17305DAH48_15610DAH49_16690DD762_08985DEN86_12400DEN87_10835DEN88_13825DEN89_16010DEN90_12395DEN91_23245DEN92_12230DEN93_08995DEN94_10335DEN95_14210DEN96_09815DEN97_10720DEN98_07830DEN99_11535DEO00_06605DEO02_16550DEO03_19720DEO04_18965DEO05_18835DEO06_16245DEO07_15705DEO08_21675DEO09_18690DEO10_18955DEO11_18845DEO13_12595DEO14_23370DEO15_11230DEO17_21855DEO18_15255DM870_19035DN627_09970DNQ45_04245DNX30_13315DRW19_13730DS732_00210DTL43_15425DTL90_16110DTM45_17550DU321_22555DXT69_23195DXT73_04770E0I42_12495E2114_21430E2115_20650E2116_20405E2118_21930E2120_20890E2123_19280E2124_19895E2125_20830E2127_21235E2129_07980E2130_15715E2131_06535E2132_10935E2133_17220E2134_19690E2135_06925E2136_19955E3N34_08900E3O05_11760E4K51_16165E4T84_16615E5H86_09085E5P26_09545E5P27_22845E5P28_10570E5P29_05185E5P34_15705E5S45_08700E5S52_15385E5S53_08055E5S54_07225E5S55_07015E5S57_15780E5S59_08710E6D34_08960EA239_12120EA435_07830EAI46_06700EAN77_19470EAX79_08870EBP16_13390ECs4675EHD79_09580EI021_09280EIA08_19370EIZ93_14020EL79_4688ELT16_12825ELT17_19015ELT24_10100ELT25_13190ELT26_19965ELT28_22380ELT31_15905ELT32_22410ELT35_13110ELT36_21245ELT39_13040ELT44_12720ELT48_19930ELT49_15745ELT52_17185ELT54_16715ELT56_20230ELT58_19250ELT60_07965ELT61_16115ELT63_20665ELU85_22890ELU96_15955ELU98_21830ELV01_18750ELV02_15415ELV03_17520ELV08_24400ELV10_16135ELV11_18690ELV12_21505ELV13_15700ELV15_16125ELV16_20220ELV21_12065ELV26_08405ELV28_03910ELV40_12430ELX68_12700ELX69_19740ELX76_22475ELX79_13910ELX96_13300ELY32_23950ELY36_20675ELY41_15020ELY48_10545EN85_003463EPS76_13990ERS085406_02407ERS085411_04313ERS139208_02924EWK56_18705ExPECSC038_00222EXX13_13725F0L67_11220F2N20_20320F2N31_18955F2N31_28850F3N40_21715F7F11_14340F7N46_22015F9413_21010F9461_19825F9B07_23365F9S83_19915F9V22_10990F9V24_15555FA849_20155FA868_20675FDM60_00740FE584_11630FE587_10635FEJ01_08625FEL34_12330FFF58_16445FGG80_19750FHD44_19380FHO90_23835FIJ20_20550FJQ40_21670FKO60_16095FNA08_11610FOI11_016960FOI11_06220FPI65_22945FPS11_21255FQF29_14350FV293_15975FWK02_01230FY127_20850FZC17_20445FZN31_24340FZU14_23265G3565_07700G3V95_07060G3W53_09190G4A38_07015G4A47_06415G5603_13560G7630_003974G9448_14785GAI66_12670GAI89_17315GAJ12_11620GAJ26_16130GF199_10830GF698_17285GF699_13340GFY34_11800GIB53_15055GJ11_23845GJO56_16000GKF66_17460GKF89_22125GNW61_20550GNZ05_15985GOP25_14930GP711_13495GP944_09560GP954_05530GP965_06250GP979_07110GQA06_03765GQM04_04775GQM13_19780GQM21_09995GQN34_13890GQW07_08580GQW80_20445GRC73_07760GRO95_08210GRW05_11265GRW56_03580GRW57_03875GSM54_05950GSY44_20705GTP88_22615GUC01_19665GUI33_04255H0O37_20080H0O39_19775H0O51_25120H0O53_09535H0O72_18960H6Y26_002492HEP30_003795HEP34_004326HHH44_002062HI055_004373HIE29_002423HIN64_000504HJ942_001824HJQ60_003303HJS37_002338HKA49_003856HL563_13665HL601_17825HLV18_19285HLX92_16310HLZ50_19965HmCms169_04481HMU06_12205HMV95_19380HMW38_12865HNC59_18730HNC59_28625HNC66_19995HNC99_14745HNC99_28920HV109_23890HV146_24070HV209_21695HVV39_11770HVW04_15255HVW43_16325HVZ71_25215HX136_24885I6H00_18510I6H01_13010I6H02_14200IA00_003426IFB95_001500IH768_12440IH772_07065IT029_001525J0541_001620J4S20_002457J5U05_004133JE86ST02C_42880JE86ST05C_42960JFD_02820JNP96_27800NCTC10082_02362NCTC10089_05028NCTC10090_03059NCTC10429_00464NCTC10767_01013NCTC10974_05706NCTC11112_01880NCTC11126_01882NCTC11181_02284NCTC13127_06468NCTC13148_04071NCTC13216_01840NCTC4450_02011NCTC7927_05535NCTC7928_03201NCTC8009_08817NCTC8333_05850NCTC8450_00026NCTC8621_05141NCTC8959_03773NCTC9001_03646NCTC9036_04914NCTC9037_05084NCTC9044_01989NCTC9075_06807NCTC9077_06277NCTC9111_05230NCTC9117_06287NCTC9706_02272NCTC9775_03454NCTC9777_01404ND22_002723RG28_23970SAMEA3472044_00553SAMEA3472056_03690SAMEA3472147_03711SAMEA3751407_02374SAMEA3753106_03210TUM18780_44090WP4S18E07_45030XU56_002945

UniProt
Find proteins for C3SLA2 (Escherichia coli)
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase epsilon chainH139Escherichia coliMutation(s): 0 
Gene Names: atpC
UniProt
Find proteins for A0A4V1DSB5 (Escherichia coli O145:NM)
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit deltaI [auth W]177Escherichia coliMutation(s): 0 
Gene Names: atpHHMPREF1611_00658
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Find proteins for V0ZA15 (Escherichia coli 908573)
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit c79Escherichia coliMutation(s): 0 
Gene Names: atpEECJG_03465
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Find proteins for F4TL55 (Escherichia coli M718)
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit bT [auth X],
U [auth Y]
156Escherichia coliMutation(s): 0 
Gene Names: atpF
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Find proteins for D6IFY0 (Escherichia coli B185)
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit aV [auth a]271Escherichia coliMutation(s): 0 
Gene Names: 
atpBatpB_1A9X72_25250AAG43_003021ACN68_12775ACN81_06510ACU57_03300AM464_11965AT335_004107AT845_000773AW119_07615BANRA_00251BF481_004021BG944_002347BGM66_001363BHS81_22305BJI68_21520BK292_20055BLM69_002282BMT50_09740BMT91_10650BN17_36921BO068_002405BOH76_10175BON63_19140BON64_06080BON67_02005BON68_19950BON69_17475BON70_16820BON72_01125BON76_09200BON80_03525BON89_05760BON95_10870BON97_15985BRV02_002577BTB68_001540BTQ06_19305BUO55_001872BvCmsHHP056_00154BvCmsKKP036_01773BvCmsKKP061_01916BvCmsKSNP073_00093BVL39_06790C1Q91_001796C3F40_16990C5N07_23075C9114_08770C9160_23510C9E67_00020CA593_07300CCS08_08920CDC27_20240CF22_002138CG831_001097CHM61_003641CIG67_24440CO706_18150CQ986_004524CR538_25535CR539_00375CTR35_001183CV83915_02325CWS33_22485CX938_001104D0X26_21590D4M65_17870DAH19_18320DAH20_23990DAH21_17755DAH22_23595DAH23_18155DAH24_17640DAH25_17895DAH26_16990DAH27_18155DAH28_17805DAH31_22960DAH32_19125DAH33_22080DAH34_09105DAH37_15370DAH38_15005DAH40_17005DAH41_14135DAH42_13455DAH43_16455DAH45_16835DAH46_15675DAH47_17330DAH48_15585DAH49_16665DEN88_13850DEN89_15985DEN90_12370DEN91_23220DEN92_12205DEN93_09020DEN94_10360DEN95_14235DEN96_09840DEN97_10745DEN98_07855DEN99_11560DEO00_06580DEO02_16525DEO03_19745DEO04_18940DEO05_18810DEO06_16220DEO07_15680DEO08_21650DEO09_18665DEO10_18930DEO11_18820DEO12_10795DEO13_12620DEO14_23345DEO15_11255DEO17_21830DEO18_15280DEO19_13515DEO20_16610DIV22_14605DN627_09995DNQ45_04220DRW19_13755DS732_00235DTL43_15450DTL90_16085DXT69_23170DXT71_06450E0I42_12470E2117_22135E2127_21210E2129_07955E2132_10910E2134_19715E4K51_16190E5H86_09110E5S45_08675E5S52_15360E5S53_08080E5S54_07200E5S55_07040E5S57_15755E6D34_08985EAI46_06675EAX79_08895EBP16_13415EC95NR1_03180ECs4680EHD79_09605EI021_09305EIZ93_13995EKI52_15345EL79_4683ELV08_24425EN85_003468ERS139208_02919EXX13_13750EYX47_15940F0L67_11195F2N20_20345F2N31_18980F2N31_28875F9461_19850F9V24_15580FDM60_00765FFF58_16420FIJ20_20575FJQ40_21695FOI11_016935FOI11_06245FPJ29_19990FPS11_21280FQF29_14375FV293_15950FVB16_05450FWK02_01255FY127_20825G3V95_07085G9448_14760GAI66_12695GAI89_17340GAJ12_11645GAJ26_16155GF699_13365GFY34_11825GIB53_15080GJ11_23870GJO56_16025GKF89_22150GNW61_20575GNZ05_15960GP944_09535GP954_05505GP965_06225GP979_07135GQA06_03740GQM04_04750GQM21_10020GRW05_11240GRW24_05800GRW56_03605GRW57_03900GUC01_19690H0O72_18985HEP30_003770HHH44_002067HKA49_003861HLZ50_19940HMV95_19405HV109_23865HV209_21670HVW43_16300HVY77_25765HVZ71_25190HX136_24860I6H00_18485I6H01_13035I6H02_14225IH772_07040J0541_001625J4S20_002462J5U05_004128JE86ST02C_42930JE86ST05C_43010JFD_02815JNP96_27775NCTC10090_03054NCTC10418_07533NCTC10429_00459NCTC11126_01888NCTC11181_02279NCTC13127_06463NCTC13216_01845NCTC4450_02006NCTC8179_05398NCTC8333_05845NCTC8622_01220NCTC8960_02611NCTC9036_04909NCTC9037_05079NCTC9045_05855NCTC9073_06659NCTC9111_05225NCTC9117_06282NCTC9706_02267ND22_002728RG28_23995SAMEA3472044_00548SAMEA3472056_03685SAMEA3472147_03706SAMEA3751407_02369SAMEA3752557_01245TUM18780_44040WR15_16550

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Find proteins for C3SL77 (Escherichia coli)
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Health and Medical Research Council (NHMRC, Australia)Australia--

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-25
    Type: Initial release