8C3A

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

  • Classification: RIBOSOME
  • Organism(s): Candida albicans
  • Mutation(s): No 

  • Deposited: 2022-12-23 Released: 2024-01-10 
  • Deposition Author(s): Kolosova, O., Zgadzay, Y., Yusupov, M.
  • Funding Organization(s): Foundation for Medical Research (France), Russian Science Foundation, National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.268 
  • R-Value Observed: 0.268 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

New crystal system to promote screening for new eukaryotic inhibitors

Kolosova, O.Zgadzay, Y.Wu, C.Validov, S.Usachev, K.Jenner, L.Sachs, M.S.Yusupova, G.Yusupov, M.

To be published.

Macromolecules

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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L2-BD [auth j],
EC [auth AW]
254Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PF08 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L3E [auth k],
FC [auth AX]
389Candida albicansMutation(s): 0 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L4-BF [auth l],
GC [auth AY]
363Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PFV1 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein CaJ7.0206G [auth m],
HC [auth AZ]
298Candida albicansMutation(s): 0 
UniProt
Find proteins for Q5AGZ7 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L6H [auth n],
IC [auth BA]
176Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PCX8 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7-AI [auth o],
JC [auth BB]
241Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PDL6 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L8J [auth p],
KC [auth BC]
262Candida albicansMutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L9-BK [auth q],
LC [auth BD]
191Candida albicansMutation(s): 0 
UniProt
Find proteins for Q5AEN2 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L10L [auth r],
MC [auth BE]
220Candida albicansMutation(s): 0 
UniProt
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L11-BM [auth s],
NC [auth BF]
174Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PHW1 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13N [auth t],
OC [auth BG]
202Candida albicansMutation(s): 0 
UniProt
Find proteins for O59931 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L14-BO [auth u],
PC [auth BH]
131Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PFL9 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L15-AP [auth v],
QC [auth BI]
204Candida albicansMutation(s): 0 
UniProt
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L13Q [auth w],
RC [auth BJ]
200Candida albicansMutation(s): 0 
UniProt
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L22R [auth x],
SC [auth BK]
185Candida albicansMutation(s): 0 
UniProt
Find proteins for Q59TE0 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18-AS [auth y],
TC [auth BL]
186Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PK43 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L19-AT [auth z],
UC [auth BM]
190Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PK40 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L20U [auth 0],
VC [auth BN]
172Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PLC9 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L21-AV [auth 2],
WC [auth BO]
160Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PGY0 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L22-BW [auth 5],
XC [auth BP]
124Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PM41 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L23-AX [auth 6],
YC [auth BQ]
137Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PPT5 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L24-AY [auth 7],
ZC [auth BR]
155Candida albicansMutation(s): 0 
UniProt
Find proteins for Q5A6A1 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L25AD [auth BS],
Z [auth 8]
142Candida albicansMutation(s): 0 
UniProt
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L24AA [auth 9],
BD [auth BT]
127Candida albicansMutation(s): 0 
UniProt
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27BA [auth AA],
CD [auth BU]
136Candida albicansMutation(s): 0 
UniProt
Find proteins for Q9P843 (Candida albicans)
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L28CA [auth AB],
DD [auth BV]
149Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PSC5 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L29DA [auth AC],
ED [auth BW]
63Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PF57 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L30EA [auth AD],
FD [auth BX]
106Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PM75 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L31-BFA [auth AE],
GD [auth BY]
112Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A8H6F1M1 (Candida albicans)
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L32GA [auth AF],
HD [auth BZ]
131Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PPN6 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L33-AHA [auth AG],
ID [auth CA]
107Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PHH4 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L34-BIA [auth AH],
JD [auth CB]
122Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PDZ1 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L29JA [auth AI],
KD [auth CC]
120Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PK30 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36KA [auth AJ],
LD [auth CD]
99Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PH21 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L37-BLA [auth AK],
MD [auth CE]
87Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PF45 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L38MA [auth AL],
ND [auth CF]
78Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PG16 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L39NA [auth AM],
OD [auth CG]
51Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PDT4 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L40-BOA [auth AN],
PD [auth CH]
52Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PL68 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L41PA [auth AO],
QD [auth CI]
25Candida albicansMutation(s): 0 
UniProt
Find proteins for P9WER7 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L42-BQA [auth AP],
RD [auth CJ]
106Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PEV4 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L43-ARA [auth AQ],
SD [auth CK]
92Candida albicansMutation(s): 0 
UniProt
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein CAALFM_C304810CASA [auth i],
TD [auth CL]
267Candida albicansMutation(s): 0 
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Find proteins for A0A1D8PK71 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S0UA [auth C],
VD [auth CN]
261Candida albicansMutation(s): 0 
UniProt
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S1VA [auth D],
WD [auth CO]
256Candida albicansMutation(s): 0 
UniProt
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S5WA [auth E],
XD [auth CP]
249Candida albicansMutation(s): 0 
UniProt
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S3XA [auth F],
YD [auth CQ]
251Candida albicansMutation(s): 0 
UniProt
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S4YA [auth G],
ZD [auth CR]
262Candida albicansMutation(s): 0 
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Find proteins for A0A1D8PCI6 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S7AE [auth CS],
ZA [auth H]
225Candida albicansMutation(s): 0 
UniProt
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6AB [auth I],
BE [auth CT]
236Candida albicansMutation(s): 0 
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Find proteins for A0A1D8PL99 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S7BB [auth J],
CE [auth CU]
186Candida albicansMutation(s): 0 
UniProt
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S8CB [auth K],
DE [auth CV]
206Candida albicansMutation(s): 0 
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S4DB [auth L],
EE [auth CW]
189Candida albicansMutation(s): 0 
UniProt
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S10-AEB [auth M],
FE [auth CX]
118Candida albicansMutation(s): 0 
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Find proteins for A0A1D8PI15 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S11AFB [auth N],
GE [auth CY]
155Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PN83 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S12GB [auth O],
HE [auth CZ]
143Candida albicansMutation(s): 0 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S13HB [auth P],
IE [auth DA]
151Candida albicansMutation(s): 0 
UniProt
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S14-AIB [auth Q],
JE [auth DB]
132Candida albicansMutation(s): 0 
UniProt
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S15JB [auth R],
KE [auth DC]
142Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PK22 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S16KB [auth S],
LE [auth DD]
142Candida albicansMutation(s): 0 
UniProt
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S17-BLB [auth T],
ME [auth DE]
137Candida albicansMutation(s): 0 
UniProt
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S18-BMB [auth U],
NE [auth DF]
145Candida albicansMutation(s): 0 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S19-ANB [auth V],
OE [auth DG]
145Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PK61 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S10OB [auth W],
PE [auth DH]
119Candida albicansMutation(s): 0 
UniProt
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S21PB [auth X],
QE [auth DI]
87Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PCG7 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S22-AQB [auth Y],
RE [auth DJ]
130Candida albicansMutation(s): 0 
UniProt
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S23 (S12)RB [auth Z],
SE [auth DK]
145Candida albicansMutation(s): 0 
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S24SB [auth a],
TE [auth DL]
135Candida albicansMutation(s): 0 
UniProt
Find proteins for Q5A7K0 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S25TB [auth b],
UE [auth DM]
105Candida albicansMutation(s): 0 
UniProt
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S26UB [auth c],
VE [auth DN]
119Candida albicansMutation(s): 0 
UniProt
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S27VB [auth d],
WE [auth DO]
82Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PTI7 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S28-BWB [auth e],
XE [auth DP]
67Candida albicansMutation(s): 0 
UniProt
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S29AXB [auth f],
YE [auth DQ]
56Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PTR4 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S30YB [auth g],
ZE [auth DR]
63Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PSK2 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-40S ribosomal protein S31 fusion proteinAF [auth DS],
ZB [auth h]
193Candida albicansMutation(s): 0 
UniProt
Find proteins for Q5A109 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Enti