G [auth m] ,HC [auth AZ] PF17144 Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) Ribosomal large subunit proteins 60S L5, and 50S L18 - Family G [auth m] ,HC [auth AZ] PF14204 Ribosomal L18 C-terminal region (Ribosomal_L18_c) Ribosomal L18 C-terminal region This domain is the C-terminal end of ribosomal L18/L5 proteins. Domain H [auth n] ,IC [auth BA] PF01159 Ribosomal protein L6e (Ribosomal_L6e) Ribosomal protein L6e - Family J [auth p] ,KC [auth BC] PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) Ribosomal protein L7Ae/L30e/S12e/Gadd45 family This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. Domain K [auth q] ,LC [auth BD] PF00347 Ribosomal protein L6 (Ribosomal_L6) Ribosomal protein L6 - Domain L [auth r] ,MC [auth BE] PF00252 Ribosomal protein L16p/L10e (Ribosomal_L16) Ribosomal protein L16p/L10e - Domain M [auth s] ,NC [auth BF] PF00281 Ribosomal protein L5 (Ribosomal_L5) Ribosomal protein L5 - Domain M [auth s] ,NC [auth BF] PF00673 ribosomal L5P family C-terminus (Ribosomal_L5_C) ribosomal L5P family C-terminus This region is found associated with Pfam:PF00281. Domain N [auth t] ,OC [auth BG] PF01294 Ribosomal protein L13e (Ribosomal_L13e) Ribosomal protein L13e - Family R [auth x] ,SC [auth BK] PF00237 Ribosomal protein L22p/L17e (Ribosomal_L22) Ribosomal protein L22p/L17e This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain S [auth y] ,TC [auth BL] PF17135 Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) Ribosomal protein 60S L18 and 50S L18e - Family T [auth z] ,UC [auth BM] PF01280 Ribosomal protein L19e (Ribosomal_L19e) Ribosomal protein L19e - Family U [auth 0] ,VC [auth BN] PF01775 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain W [auth 5] ,XC [auth BP] PF01776 Ribosomal L22e protein family (Ribosomal_L22e) Ribosomal L22e protein family - Family Y [auth 7] ,ZC [auth BR] PF01246 Ribosomal protein L24e (Ribosomal_L24e) Ribosomal protein L24e - Domain AD [auth BS] ,Z [auth 8] PF00276 Ribosomal protein L23 (Ribosomal_L23) Ribosomal protein L23 - Family BA [auth AA] ,CD [auth BU] PF01777 Ribosomal L27e protein family (Ribosomal_L27e) Ribosomal L27e protein family - Family CA [auth AB] ,DD [auth BV] PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A - Family DA [auth AC] ,ED [auth BW] PF01779 Ribosomal L29e protein family (Ribosomal_L29e) Ribosomal L29e protein family - Family GA [auth AF] ,HD [auth BZ] PF01655 Ribosomal protein L32 (Ribosomal_L32e) Ribosomal protein L32 - Family HA [auth AG] ,ID [auth CA] PF01247 Ribosomal protein L35Ae (Ribosomal_L35Ae) Ribosomal protein L35Ae - Domain JA [auth AI] ,KD [auth CC] PF00831 Ribosomal L29 protein (Ribosomal_L29) Ribosomal L29 protein - Family KA [auth AJ] ,LD [auth CD] PF01158 Ribosomal protein L36e (Ribosomal_L36e) Ribosomal protein L36e - Family LA [auth AK] ,MD [auth CE] PF01907 Ribosomal protein L37e (Ribosomal_L37e) Ribosomal protein L37e - Family MA [auth AL] ,ND [auth CF] PF01781 Ribosomal L38e protein family (Ribosomal_L38e) Ribosomal L38e protein family - Family NA [auth AM] ,OD [auth CG] PF00832 Ribosomal L39 protein (Ribosomal_L39) Ribosomal L39 protein - Family PA [auth AO] ,QD [auth CI] PF05162 Ribosomal protein L41 (Ribosomal_L41) Ribosomal protein L41 - Family QA [auth AP] ,RD [auth CJ] PF00935 Ribosomal protein L44 (Ribosomal_L44) Ribosomal protein L44 - Family RA [auth AQ] ,SD [auth CK] PF01780 Ribosomal L37ae protein family (Ribosomal_L37ae) Ribosomal L37ae protein family - Family VA [auth D] ,WD [auth CO] PF01667 Ribosomal protein S27 (Ribosomal_S27e) Ribosomal protein S27 - Family YA [auth G] ,ZD [auth CR] PF04758 Ribosomal protein S30 (Ribosomal_S30) Ribosomal protein S30 - Family YA [auth G] ,ZD [auth CR] PF00900 Ribosomal family S4e (Ribosomal_S4e) Ribosomal family S4e - Family YA [auth G] ,ZD [auth CR] PF16121 40S ribosomal protein S4 C-terminus (40S_S4_C) 40S ribosomal protein S4 C-terminus - Family YA [auth G] ,ZD [auth CR] PF08071 RS4NT (NUC023) domain (RS4NT) RS4NT (NUC023) domain This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain YA [auth G] ,ZD [auth CR] PF01479 S4 domain (S4) S4 domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. Domain YA [auth G] ,ZD [auth CR] PF00467 KOW motif (KOW) KOW motif - Family DB [auth L] ,EE [auth CW] PF00163 Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) Ribosomal protein S4/S9 N-terminal domain - Family DB [auth L] ,EE [auth CW] PF00573 Ribosomal protein L4/L1 family (Ribosomal_L4) Ribosomal protein L4/L1 family - Family DB [auth L] ,EE [auth CW] PF01479 S4 domain (S4) S4 domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. Domain FB [auth N] ,GE [auth CY] PF16205 Ribosomal_S17 N-terminal (Ribosomal_S17_N) Ribosomal_S17 N-terminal - Family FB [auth N] ,GE [auth CY] PF00366 Ribosomal protein S17 (Ribosomal_S17) Ribosomal protein S17 - Domain FB [auth N] ,GE [auth CY] PF01159 Ribosomal protein L6e (Ribosomal_L6e) Ribosomal protein L6e - Family GB [auth O] ,HE [auth CZ] PF00327 Ribosomal protein L30p/L7e (Ribosomal_L30) Ribosomal protein L30p/L7e This family includes prokaryotic L30 and eukaryotic L7. Domain GB [auth O] ,HE [auth CZ] PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) Ribosomal protein L7Ae/L30e/S12e/Gadd45 family This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. Domain HB [auth P] ,IE [auth DA] PF00312 Ribosomal protein S15 (Ribosomal_S15) Ribosomal protein S15 - Domain HB [auth P] ,IE [auth DA] PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) Ribosomal protein L7Ae/L30e/S12e/Gadd45 family This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. Domain JB [auth R] ,KE [auth DC] PF00252 Ribosomal protein L16p/L10e (Ribosomal_L16) Ribosomal protein L16p/L10e - Domain JB [auth R] ,KE [auth DC] PF00203 Ribosomal protein S19 (Ribosomal_S19) Ribosomal protein S19 - Domain LB [auth T] ,ME [auth DE] PF01294 Ribosomal protein L13e (Ribosomal_L13e) Ribosomal protein L13e - Family NB [auth V] ,OE [auth DG] PF01090 Ribosomal protein S19e (Ribosomal_S19e) Ribosomal protein S19e - Family NB [auth V] ,OE [auth DG] PF00827 Ribosomal L15 (Ribosomal_L15e) Ribosomal L15 - Family OB [auth W] ,PE [auth DH] PF00338 Ribosomal protein S10p/S20e (Ribosomal_S10) Ribosomal protein S10p/S20e This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain OB [auth W] ,PE [auth DH] PF00572 Ribosomal protein L13 (Ribosomal_L13) Ribosomal protein L13 - Family PB [auth X] ,QE [auth DI] PF00237 Ribosomal protein L22p/L17e (Ribosomal_L22) Ribosomal protein L22p/L17e This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain PB [auth X] ,QE [auth DI] PF01249 Ribosomal protein S21e (Ribosomal_S21e) Ribosomal protein S21e - Family QB [auth Y] ,RE [auth DJ] PF17135 Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) Ribosomal protein 60S L18 and 50S L18e - Family QB [auth Y] ,RE [auth DJ] PF00410 Ribosomal protein S8 (Ribosomal_S8) Ribosomal protein S8 - Domain RB [auth Z] ,SE [auth DK] PF01280 Ribosomal protein L19e (Ribosomal_L19e) Ribosomal protein L19e - Family RB [auth Z] ,SE [auth DK] PF00164 Ribosomal protein S12/S23 (Ribosom_S12_S23) Ribosomal protein S12/S23 - Family SB [auth a] ,TE [auth DL] PF01282 Ribosomal protein S24e (Ribosomal_S24e) Ribosomal protein S24e - Family XB [auth f] ,YE [auth DQ] PF00253 Ribosomal protein S14p/S29e (Ribosomal_S14) Ribosomal protein S14p/S29e - Family AC [auth AR] ,BF [auth DT] PF00400 WD domain, G-beta repeat (WD40) WD domain, G-beta repeat - Repeat CF [auth P0] ,GF [auth p0] PF00466 Ribosomal protein L10 (Ribosomal_L10) Ribosomal protein L10 - Family EF [auth L1] ,FF [auth l1] PF00687 Ribosomal protein L1p/L10e family (Ribosomal_L1) Ribosomal protein L1p/L10e family This family includes prokaryotic L1 and eukaryotic L10. Domain O [auth u] ,PC [auth BH] PF01929 Ribosomal protein L14 (Ribosomal_L14e) Ribosomal protein L14 - Family P [auth v] ,QC [auth BI] PF00827 Ribosomal L15 (Ribosomal_L15e) Ribosomal L15 - Family Q [auth w] ,RC [auth BJ] PF00572 Ribosomal protein L13 (Ribosomal_L13) Ribosomal protein L13 - Family X [auth 6] ,YC [auth BQ] PF00238 Ribosomal protein L14p/L23e (Ribosomal_L14) Ribosomal protein L14p/L23e - Domain AA [auth 9] ,BD [auth BT] PF16906 Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) Ribosomal proteins L26 eukaryotic, L24P archaeal - Family FA [auth AE] ,GD [auth BY] PF01198 Ribosomal protein L31e (Ribosomal_L31e) Ribosomal protein L31e - Family D [auth j] ,EC [auth AW] PF03947 Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) Ribosomal Proteins L2, C-terminal domain - Domain D [auth j] ,EC [auth AW] PF00181 Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) Ribosomal Proteins L2, RNA binding domain - Domain OA [auth AN] ,PD [auth CH] PF01020 Ribosomal L40e family (Ribosomal_L40e) Ribosomal L40e family - Family UA [auth C] ,VD [auth CN] PF00318 Ribosomal protein S2 (Ribosomal_S2) Ribosomal protein S2 - Family WA [auth E] ,XD [auth CP] PF03719 Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) Ribosomal protein S5, C-terminal domain - Domain WA [auth E] ,XD [auth CP] PF00333 Ribosomal protein S5, N-terminal domain (Ribosomal_S5) Ribosomal protein S5, N-terminal domain - Domain XA [auth F] ,YD [auth CQ] PF07650 KH domain (KH_2) KH domain - Domain XA [auth F] ,YD [auth CQ] PF00253 Ribosomal protein S14p/S29e (Ribosomal_S14) Ribosomal protein S14p/S29e - Family XA [auth F] ,YD [auth CQ] PF00189 Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) Ribosomal protein S3, C-terminal domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain AE [auth CS] ,ZA [auth H] PF00177 Ribosomal protein S7p/S5e (Ribosomal_S7) Ribosomal protein S7p/S5e This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain AB [auth I] ,BE [auth CT] PF01092 Ribosomal protein S6e (Ribosomal_S6e) Ribosomal protein S6e - Family BB [auth J] ,CE [auth CU] PF03947 Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) Ribosomal Proteins L2, C-terminal domain - Domain BB [auth J] ,CE [auth CU] PF00181 Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) Ribosomal Proteins L2, RNA binding domain - Domain BB [auth J] ,CE [auth CU] PF01251 Ribosomal protein S7e (Ribosomal_S7e) Ribosomal protein S7e - Family CB [auth K] ,DE [auth CV] PF01201 Ribosomal protein S8e (Ribosomal_S8e) Ribosomal protein S8e - Family EB [auth M] ,FE [auth CX] PF17144 Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) Ribosomal large subunit proteins 60S L5, and 50S L18 - Family EB [auth M] ,FE [auth CX] PF03501 Plectin/S10 domain (S10_plectin) Plectin/S10 domain This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Domain F [auth l] ,GC [auth AY] PF14374 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) 60S ribosomal protein L4 C-terminal domain This family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain F [auth l] ,GC [auth AY] PF00573 Ribosomal protein L4/L1 family (Ribosomal_L4) Ribosomal protein L4/L1 family - Family IB [auth Q] ,JE [auth DB] PF00347 Ribosomal protein L6 (Ribosomal_L6) Ribosomal protein L6 - Domain IB [auth Q] ,JE [auth DB] PF00411 Ribosomal protein S11 (Ribosomal_S11) Ribosomal protein S11 - Family KB [auth S] ,LE [auth DD] PF00380 Ribosomal protein S9/S16 (Ribosomal_S9) Ribosomal protein S9/S16 - Family KB [auth S] ,LE [auth DD] PF00281 Ribosomal protein L5 (Ribosomal_L5) Ribosomal protein L5 - Domain KB [auth S] ,LE [auth DD] PF00673 ribosomal L5P family C-terminus (Ribosomal_L5_C) ribosomal L5P family C-terminus This region is found associated with Pfam:PF00281. Domain MB [auth U] ,NE [auth DF] PF00416 Ribosomal protein S13/S18 (Ribosomal_S13) Ribosomal protein S13/S18 - Family MB [auth U] ,NE [auth DF] PF01929 Ribosomal protein L14 (Ribosomal_L14e) Ribosomal protein L14 - Family VB [auth d] ,WE [auth DO] PF01667 Ribosomal protein S27 (Ribosomal_S27e) Ribosomal protein S27 - Family I [auth o] ,JC [auth BB] PF00327 Ribosomal protein L30p/L7e (Ribosomal_L30) Ribosomal protein L30p/L7e This family includes prokaryotic L30 and eukaryotic L7. Domain 
