5C2J

Complex structure of the GAP domain of MgcRacGAP and Cdc42


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.198 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural basis of G-protein target alternation of MgcRacGAP by phospholylation

Murayama, K.Kato-Murayama, M.Hosaka, T.Kawashima, T.Kitamura, T.Yokoyama, S.Shirouzu, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Rac GTPase-activating protein 1
A
208Homo sapiensMutation(s): 0 
Gene Names: RACGAP1 (KIAA1478, MGCRACGAP)
Find proteins for Q9H0H5 (Homo sapiens)
Go to Gene View: RACGAP1
Go to UniProtKB:  Q9H0H5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Cell division control protein 42 homolog
B
198Mus musculusMutation(s): 0 
Gene Names: Cdc42
Find proteins for P60766 (Mus musculus)
Go to UniProtKB:  P60766
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download SDF File 
Download CCD File 
B
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
AF3
Query on AF3

Download SDF File 
Download CCD File 
B
ALUMINUM FLUORIDE
Al F3
KLZUFWVZNOTSEM-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.198 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 43.324α = 90.00
b = 74.237β = 96.67
c = 55.423γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
CNSrefinement
MOLREPphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-06-22
    Type: Initial release