5C2K

Crystal structure of the fusion protein linked by RhoA and the GAP domain of MgcRacGAP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.184 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of G-protein target alternation of MgcRacGAP by phospholylation

Murayama, K.Kato-Murayama, M.Hosaka, T.kawashima, T.Kitamura, T.Yokoyama, S.Shirouzu, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Transforming protein RhoA,Rac GTPase-activating protein 1A415Homo sapiensMutation(s): 1 
Gene Names: RHOARACGAP1
EC: 3.6.5.2
Find proteins for Q9H0H5 (Homo sapiens)
Explore Q9H0H5 
Go to UniProtKB:  Q9H0H5
NIH Common Fund Data Resources
PHAROS:  Q9H0H5
Find proteins for P61586 (Homo sapiens)
Explore P61586 
Go to UniProtKB:  P61586
NIH Common Fund Data Resources
PHAROS:  P61586
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download Ideal Coordinates CCD File 
D [auth A]GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
AF3
Query on AF3

Download Ideal Coordinates CCD File 
C [auth A]ALUMINUM FLUORIDE
Al F3
KLZUFWVZNOTSEM-UHFFFAOYSA-K
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
B [auth A]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.184 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.491α = 90
b = 77.041β = 108.53
c = 62.253γ = 90
Software Package:
Software NamePurpose
CNSrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-06-22
    Type: Initial release
  • Version 1.1: 2020-02-19
    Changes: Data collection, Derived calculations