5RFO

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 main protease in complex with PCM-0102972


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.205 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

PanDDA analysis group deposition of SARS-CoV-2 mainprotease fragment screen

Fearon, D.Owen, C.D.Douangamath, A.Lukacik, P.Powell, A.J.Strain-Damerell, C.M.Resnick, E.Krojer, T.Gehrtz, P.Wild, C.Aimon, A.Brandao-Neto, J.Carbery, A.Dunnett, L.Skyner, R.Snee, M.London, N.Walsh, M.A.von Delft, F.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
main protease
A
306N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
T7S
Query on T7S

Download SDF File 
Download CCD File 
A
1-[4-(piperidine-1-carbonyl)piperidin-1-yl]ethan-1-one
C13 H22 N2 O2
VFXWKIZCOQQJGS-UHFFFAOYSA-N
 Ligand Interaction
DMS
Query on DMS

Download SDF File 
Download CCD File 
A
DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.205 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 111.986α = 90.00
b = 52.546β = 103.15
c = 44.593γ = 90.00
Software Package:
Software NamePurpose
REFMACphasing
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2020-03-25
    Type: Initial release