5REZ

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 main protease in complex with POB0129


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

PanDDA analysis group deposition of SARS-CoV-2 mainprotease fragment screen

Fearon, D.Owen, C.D.Douangamath, A.Lukacik, P.Powell, A.J.Strain-Damerell, C.M.Resnick, E.Krojer, T.Gehrtz, P.Wild, C.Aimon, A.Brandao-Neto, J.Carbery, A.Dunnett, L.Skyner, R.Snee, M.London, N.Walsh, M.A.von Delft, F.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
main protease
A
306N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
T54
Query on T54

Download SDF File 
Download CCD File 
A
(1R,2S)-2-(thiophen-3-yl)cyclopentane-1-carboxamide
C10 H13 N O S
GQGCCJATUDDTKK-RKDXNWHRSA-N
 Ligand Interaction
DMS
Query on DMS

Download SDF File 
Download CCD File 
A
DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.202 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 113.199α = 90.00
b = 53.268β = 102.91
c = 44.427γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
REFMACrefinement
PDB_EXTRACTdata extraction
Aimlessdata scaling
REFMACphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2020-03-25
    Type: Initial release