6NS1

Crystal structure of DIP-gamma IG1+IG2

• PDB DOI: https://doi.org/10.2210/pdb6NS1/pdb

• Classification: CELL ADHESION
• Organism(s): Drosophila melanogaster
• Expression System: Trichoplusia ni
• Mutation(s): No 


• Deposited: 2019-01-24 Released: 2019-02-06 
• Deposition Author(s): Cheng, S., Park, Y.J., Kurleto, J.D., Ozkan, E.
• Funding Organization(s): National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.235 
• R-Value Work: 0.204 
• R-Value Observed: 0.206 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 24.58 kDa 
• Atom Count: 1,839 
• Modelled Residue Count: 207 
• Deposited Residue Count: 213 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dpr-interacting protein gamma	A	213	Drosophila melanogaster	Mutation(s): 0  Gene Names: DIP-gamma, 14521, anon-WO0140519.196, CT34248, Dmel\CG14521, CG14521, Dmel_CG14521
UniProt
Find proteins for Q9VAR6 (Drosophila melanogaster) Explore Q9VAR6  Go to UniProtKB:  Q9VAR6

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	B	3		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G21290RB GlyCosmos:  G21290RB GlyGen:  G21290RB

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.235 
• R-Value Work: 0.204 
• R-Value Observed: 0.206 
• Space Group: P 1 2₁ 1
• Diffraction Data: https://doi.org/10.15785/SBGRID/644

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 29.33	α = 90
b = 43.44	β = 90.46
c = 86.14	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

Currently 6NS1 does not have a validation slider image.

Entry History & Funding Information

Deposition Data

• Released Date: 2019-02-06 
Deposition Author(s): Cheng, S., Park, Y.J., Kurleto, J.D., Ozkan, E.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)	United States	R01 NS097161

Revision History  

• Version 1.0: 2019-02-06
  Type: Initial release
  
• Version 1.1: 2019-12-18
  Changes: Author supporting evidence, Data collection
• Version 2.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Atomic model, Data collection, Derived calculations, Structure summary
• Version 2.1: 2023-10-11
  Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary