3UNJ

CDK2 in complex with inhibitor YL1-038-31


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 3UNJ

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 34377.78

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent kinase 2 A 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0BX
Query on 0BX

A 4-{[4-(phenylamino)pyrimidin-2-yl]amino}benzoic acid
C17 H14 N4 O2
BUKMSYYNNHEANR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0BX N/A in BindingDB
IC50: 11000 nM  BindingMOAD
IC50: 11000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.199
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 53.22 α = 90.00
b = 71.96 β = 90.00
c = 72.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-15
  • Released Date: 2012-01-25
  • Deposition author(s): Zhu, J.-Y., Martin, M.P., Alam, R., Schonbrunn, E.

Revision History

  • Version 1_0: 2012-01-25

    Type: Initial release

  • Version 1_1: 2012-05-02

    Type: Database references