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NHEJ Long-range synaptic complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6ERH experimental model PDB 1JEY experimental model PDB 5LUQ experimental model PDB 5Y3R experimental model PDB 6ZHA experimental model PDB 2R9A experimental model PDB 3II6
Sample Long-range synaptic Complex of NHEJ
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 329784 Reported Resolution (Å) 4.6 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (6ERH, 1JEY, 5LUQ, 5Y3R, 6ZHA, 2R9A, 3II6) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Correlation coefficient Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 76.5
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model JEOL 3200FS Minimum Defocus (nm) 2000 Maximum Defocus (nm) 4000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode DARK FIELD Specimen Holder Model JEOL Nominal Magnification 30000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION Appion IMAGE ACQUISITION RELION 3.1 CTF CORRECTION Gctf 0.50 CTF CORRECTION CTFFIND 4.1 MODEL FITTING Coot MODEL FITTING ISOLDE INITIAL EULER ASSIGNMENT EMAN INITIAL EULER ASSIGNMENT cryoSPARC FINAL EULER ASSIGNMENT RELION 3.1 CLASSIFICATION RELION 3.1 RECONSTRUCTION RELION 3.1 MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE 1119381