Structure Prediction

Software for structure prediction


AlphaFold2 Open source code for AlphaFold
RoseTTAFold A software tool that uses deep learning to quickly and accurately predict protein structures based on limited information.
OpenFold Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
OmegaFold OmegaFold Release Code
HelixFold An Efficient and Improved Implementation of AlphaFold 2 using PaddlePaddle
HelixFold-single A single sequence language-model-based prediction network
ESMFold Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Web servers

ColabFold AlphaFold2 using MMseqs2
I-TASSER (Iterative Threading ASSEmbly Refinement) is a hierarchical approach to protein structure prediction and structure-based function annotation

Databases of pre-computed models

AlphaFold Protein Structure Database AlphaFold is an AI system developed by DeepMind that predicts a protein’s 3D structure from its amino acid sequence
ModelArchive Repository for theoretical models of macromolecular structures
ModBase A database of comparative protein structure models
SWISS-MODEL Repository A database of annotated protein structure homology models

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Last updated: 9/8/2022