Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1uwab1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Bd1uwab2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
D [auth E]d1uwae1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
D [auth E]d1uwae2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
F [auth H]d1uwah1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
F [auth H]d1uwah2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
K [auth O]d1uwao1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
K [auth O]d1uwao2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
M [auth R]d1uwar1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
M [auth R]d1uwar2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
O [auth V]d1uwav1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
O [auth V]d1uwav2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Ad1uwaa1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Ad1uwaa2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
I [auth K]d1uwak1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
I [auth K]d1uwak2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Cd1uwac_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
E [auth F]d1uwaf_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
G [auth I]d1uwai_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
J [auth M]d1uwam_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
L [auth P]d1uwap_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
N [auth T]d1uwat_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
P [auth W]d1uwaw_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
H [auth J]d1uwaj_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
F [auth H]SCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
F [auth H]SCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
K [auth O]SCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
K [auth O]SCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
M [auth R]SCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
M [auth R]SCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
O [auth V]SCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
O [auth V]SCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
I [auth K]SCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
I [auth K]SCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)
G [auth I]SCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)
J [auth M]SCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)
L [auth P]SCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)
N [auth T]SCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)
P [auth W]SCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)
H [auth J]SCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRuBisCO_large_Ne1uwaB1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
BRuBisCO_largee1uwaB2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
D [auth E]RuBisCO_large_Ne1uwaE1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
D [auth E]RuBisCO_largee1uwaE2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
F [auth H]RuBisCO_large_Ne1uwaH1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
F [auth H]RuBisCO_largee1uwaH2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
K [auth O]RuBisCO_large_Ne1uwaO1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
K [auth O]RuBisCO_largee1uwaO2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
M [auth R]RuBisCO_large_Ne1uwaR1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
M [auth R]RuBisCO_largee1uwaR2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
O [auth V]RuBisCO_large_Ne1uwaV1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
O [auth V]RuBisCO_largee1uwaV2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
ARuBisCO_large_Ne1uwaA1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
ARuBisCO_largee1uwaA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
I [auth K]RuBisCO_large_Ne1uwaK1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
I [auth K]RuBisCO_largee1uwaK2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
CRuBisCO_smalle1uwaC1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
E [auth F]RuBisCO_smalle1uwaF1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
G [auth I]RuBisCO_smalle1uwaI1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
J [auth M]RuBisCO_smalle1uwaM1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
L [auth P]RuBisCO_smalle1uwaP1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
N [auth T]RuBisCO_smalle1uwaT1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
P [auth W]RuBisCO_smalle1uwaW1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
H [auth J]RuBisCO_smalle1uwaJ1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
B3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
D [auth E]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
D [auth E]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
F [auth H]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
F [auth H]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
K [auth O]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
K [auth O]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
M [auth R]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
M [auth R]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
O [auth V]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
O [auth V]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
A3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
A3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
I [auth K]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
I [auth K]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
C3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
E [auth F]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
G [auth I]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
J [auth M]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
L [auth P]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
N [auth T]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
P [auth W]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
H [auth J]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain
PF00101Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)Ribulose bisphosphate carboxylase, small chain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR020888Ribulose bisphosphate carboxylase large subunit, type IFamily
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyHomologous Superfamily
IPR020878Ribulose bisphosphate carboxylase, large chain, active siteActive Site
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalDomain
IPR033966RuBisCOFamily
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalDomain
IPR036422RuBisCO large subunit, N-terminal domain superfamilyHomologous Superfamily
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilyHomologous Superfamily
IPR024681Ribulose bisphosphate carboxylase, small subunitFamily
IPR000894Ribulose bisphosphate carboxylase small subunit, domainDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
HYP Parent Component: PRO

RESIDAA0030

PSI-MOD :  4-hydroxy-L-proline MOD:00039
KCX Parent Component: LYS

RESIDAA0030

SMC Parent Component: CYS

RESIDAA0030 , AA0234

PSI-MOD :  4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239