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L290F mutant rubisco from chlamydomonas
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GK8 PDB ENTRY 1GK8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 291 HEPES PH 7.5, 8-12% PEG 4 50 MM NAHCO3, 5 MM MGCL2, 50 UM 2-CABP, 18 DEG C, 10-15 MG PROTEIN
Crystal Properties Matthews coefficient Solvent content 2.11 41.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.983 α = 90 b = 177.709 β = 117.7 c = 122.663 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2003-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 96.6 0.14 10 22.4 264805
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.26 2.31 93.4 0.43 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GK8 2.3 30 189087 10114 98.2 0.172 0.171 0.1703 0.205 0.2047 RANDOM 34.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.73 0.3 -0.14 -1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.004 r_scangle_it 4.364 r_scbond_it 3.086 r_mcangle_it 1.981 r_angle_refined_deg 1.235 r_mcbond_it 1.029 r_symmetry_vdw_refined 0.457 r_symmetry_hbond_refined 0.357 r_nbd_refined 0.195 r_xyhbond_nbd_refined 0.133
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.004 r_scangle_it 4.364 r_scbond_it 3.086 r_mcangle_it 1.981 r_angle_refined_deg 1.235 r_mcbond_it 1.029 r_symmetry_vdw_refined 0.457 r_symmetry_hbond_refined 0.357 r_nbd_refined 0.195 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.089 r_metal_ion_refined 0.078 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 38232 Nucleic Acid Atoms Solvent Atoms 2310 Heterogen Atoms 412
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing