9ETT | pdb_00009ett

Structure of the archaellum of Sulfolobus acidocaldarius strain MW039 (delta agl3 mutant).


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.37 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Towards a molecular picture of the archaeal cell surface.

Gaines, M.C.Isupov, M.N.McLaren, M.Mollat, C.L.Haque, R.U.Stephenson, J.K.Sivabalasarma, S.Hanus, C.Kattnig, D.Gold, V.A.M.Albers, S.Daum, B.

(2024) Nat Commun 15: 10401-10401

  • DOI: https://doi.org/10.1038/s41467-024-53986-9
  • Primary Citation of Related Structures:  
    8QX4, 8RZL, 9ETS, 9ETT, 9EV0

  • PubMed Abstract: 

    Archaea produce various protein filaments with specialised functions. While some archaea produce only one type of filament, the archaeal model species Sulfolobus acidocaldarius generates four. These include rotary swimming propellers analogous to bacterial flagella (archaella), pili for twitching motility (Aap), adhesive fibres (threads), and filaments facilitating homologous recombination upon UV stress (UV pili). Here, we use cryo-electron microscopy to describe the structure of the S. acidocaldarius archaellum at 2.0 Å resolution, and update the structures of the thread and the Aap pilus at 2.7 Å and 2.6 Å resolution, respectively. We define features unique to archaella of the order Sulfolobales and compare their structure to those of Aap and threads in the context of the S-layer. We define distinct N-glycan patterns in the three filaments and identify a putative O-glycosylation site in the thread. Finally, we ascertain whether N-glycan truncation leads to structural changes in archaella and Aap.


  • Organizational Affiliation
    • Living Systems Institute, University of Exeter, Exeter, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellin293Sulfolobus acidocaldariusMutation(s): 0 
UniProt
Find proteins for M1IUY5 (Sulfolobus acidocaldarius N8)
Explore M1IUY5 
Go to UniProtKB:  M1IUY5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupM1IUY5
Glycosylation
Glycosylation Sites: 6
Sequence Annotations
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-mannopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
AA [auth a],
AB [auth 0],
AC [auth QA],
AD [auth qA],
AE [auth GB],
AA [auth a],
AB [auth 0],
AC [auth QA],
AD [auth qA],
AE [auth GB],
BA [auth b],
BB [auth 1],
BC [auth RA],
BD [auth rA],
BE [auth HB],
CA [auth c],
CB [auth 2],
CC [auth SA],
CD [auth sA],
CE [auth IB],
DA [auth d],
DB [auth 3],
DC [auth TA],
DD [auth tA],
DE [auth JB],
EA [auth e],
EB [auth 4],
EC [auth UA],
ED [auth uA],
EE [auth KB],
FA [auth f],
FB [auth 5],
FC [auth VA],
FD [auth vA],
FE [auth LB],
GA [auth g],
GB [auth 6],
GC [auth WA],
GD [auth wA],
GE [auth MB],
HA [auth h],
HB [auth 7],
HC [auth XA],
HD [auth xA],
HE [auth NB],
IA [auth i],
IB [auth 8],
IC [auth YA],
ID [auth yA],
IE [auth OB],
JA [auth j],
JB [auth 9],
JC [auth ZA],
JD [auth zA],
JE [auth PB],
KA [auth k],
KB [auth AA],
KC [auth aA],
KD [auth 0A],
LA [auth l],
LB [auth BA],
LC [auth bA],
LD [auth 1A],
MA [auth m],
MB [auth CA],
MC [auth cA],
MD [auth 2A],
NA [auth n],
NB [auth DA],
NC [auth dA],
ND [auth 3A],
OA [auth o],
OB [auth EA],
OC [auth eA],
OD [auth 4A],
PA [auth p],
PB [auth FA],
PC [auth fA],
PD [auth 5A],
QA [auth q],
QB [auth GA],
QC [auth gA],
QD [auth 6A],
RA [auth r],
RB [auth HA],
RC [auth hA],
RD [auth 7A],
SA [auth s],
SB [auth IA],
SC [auth iA],
SD [auth 8A],
TA [auth t],
TB [auth JA],
TC [auth jA],
TD [auth 9A],
U,
UA [auth u],
UB [auth KA],
UC [auth kA],
UD [auth AB],
V,
VA [auth v],
VB [auth LA],
VC [auth lA],
VD [auth BB],
W,
WA [auth w],
WB [auth MA],
WC [auth mA],
WD [auth CB],
X,
XA [auth x],
XB [auth NA],
XC [auth nA],
XD [auth DB],
Y,
YA [auth y],
YB [auth OA],
YC [auth oA],
YD [auth EB],
Z,
ZA [auth z],
ZB [auth PA],
ZC [auth pA],
ZD [auth FB]
3N-Glycosylation
Glycosylation Resources
GlyTouCan:  G34031ES
GlyCosmos:  G34031ES
GlyGen:  G34031ES
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.37 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTREFMAC5.8.0267
MODEL REFINEMENTISOLDE
RECONSTRUCTIONcryoSPARC4.4.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union109784

Revision History  (Full details and data files)

  • Version 1.0: 2025-02-05
    Type: Initial release