8RZL | pdb_00008rzl

Sulfolobus acidocaldarius threads (0406) filament.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.65 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Towards a molecular picture of the archaeal cell surface.

Gaines, M.C.Isupov, M.N.McLaren, M.Mollat, C.L.Haque, R.U.Stephenson, J.K.Sivabalasarma, S.Hanus, C.Kattnig, D.Gold, V.A.M.Albers, S.Daum, B.

(2024) Nat Commun 15: 10401-10401

  • DOI: https://doi.org/10.1038/s41467-024-53986-9
  • Primary Citation of Related Structures:  
    8QX4, 8RZL, 9ETS, 9ETT, 9EV0

  • PubMed Abstract: 

    Archaea produce various protein filaments with specialised functions. While some archaea produce only one type of filament, the archaeal model species Sulfolobus acidocaldarius generates four. These include rotary swimming propellers analogous to bacterial flagella (archaella), pili for twitching motility (Aap), adhesive fibres (threads), and filaments facilitating homologous recombination upon UV stress (UV pili). Here, we use cryo-electron microscopy to describe the structure of the S. acidocaldarius archaellum at 2.0 Å resolution, and update the structures of the thread and the Aap pilus at 2.7 Å and 2.6 Å resolution, respectively. We define features unique to archaella of the order Sulfolobales and compare their structure to those of Aap and threads in the context of the S-layer. We define distinct N-glycan patterns in the three filaments and identify a putative O-glycosylation site in the thread. Finally, we ascertain whether N-glycan truncation leads to structural changes in archaella and Aap.


  • Organizational Affiliation
    • Living Systems Institute, University of Exeter, Exeter, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Sulfolobus acidocaldarius threads (0406) filament.A [auth C],
B [auth E],
C [auth A],
D [auth B],
E [auth D]
183Sulfolobus acidocaldariusMutation(s): 0 
UniProt
Find proteins for Q4JBK8 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
Explore Q4JBK8 
Go to UniProtKB:  Q4JBK8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4JBK8
Glycosylation
Glycosylation Sites: 6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.65 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTREFMAC5.8.0267
MODEL REFINEMENTISOLDE

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union109784

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-01
    Type: Initial release
  • Version 1.1: 2024-10-09
    Changes: Data collection, Structure summary
  • Version 1.2: 2025-02-05
    Changes: Data collection, Database references