8E4C

IgM BCR fab truncated form


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Structural principles of B cell antigen receptor assembly.

Dong, Y.Pi, X.Bartels-Burgahn, F.Saltukoglu, D.Liang, Z.Yang, J.Alt, F.W.Reth, M.Wu, H.

(2022) Nature 612: 156-161

  • DOI: https://doi.org/10.1038/s41586-022-05412-7
  • Primary Citation of Related Structures:  
    8E4C, 8EMA

  • PubMed Abstract: 

    The B cell antigen receptor (BCR) is composed of a membrane-bound class M, D, G, E or A immunoglobulin for antigen recognition 1-3 and a disulfide-linked Igα (also known as CD79A) and Igβ (also known as CD79B) heterodimer (Igα/β) that functions as the signalling entity through intracellular immunoreceptor tyrosine-based activation motifs (ITAMs) 4,5 . The organizing principle of the BCR remains unknown. Here we report cryo-electron microscopy structures of mouse full-length IgM BCR and its Fab-deleted form. At the ectodomain (ECD), the Igα/β heterodimer mainly uses Igα to associate with Cµ3 and Cµ4 domains of one heavy chain (µHC) while leaving the other heavy chain (µHC') unbound. The transmembrane domain (TMD) helices of µHC and µHC' interact with those of the Igα/β heterodimer to form a tight four-helix bundle. The asymmetry at the TMD prevents the recruitment of two Igα/β heterodimers. Notably, the connecting peptide between the ECD and TMD of µHC intervenes in between those of Igα and Igβ to guide TMD assembly through charge complementarity. Weaker but distinct density for the Igβ ITAM nestles next to the TMD, suggesting potential autoinhibition of ITAM phosphorylation. Interfacial analyses suggest that all BCR classes utilize a general organizational architecture. Our studies provide a structural platform for understanding B cell signalling and designing rational therapies against BCR-mediated diseases.


  • Organizational Affiliation

    Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 2 of Immunoglobulin heavy constant muA [auth B],
B [auth A]
417Mus musculusMutation(s): 0 
Gene Names: IghmIgh-6
Membrane Entity: Yes 
UniProt
Find proteins for P01872 (Mus musculus)
Explore P01872 
Go to UniProtKB:  P01872
Entity Groups  
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UniProt GroupP01872
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
B-cell antigen receptor complex-associated protein alpha chain,Yellow fluorescent protein378Mus musculusMutation(s): 0 
Gene Names: Cd79aIgaMb-1luxY
Membrane Entity: Yes 
UniProt
Find proteins for P11911 (Mus musculus)
Explore P11911 
Go to UniProtKB:  P11911
Find proteins for P21578 (Aliivibrio fischeri)
Explore P21578 
Go to UniProtKB:  P21578
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP11911P21578
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
B-cell antigen receptor complex-associated protein beta chain228Mus musculusMutation(s): 0 
Gene Names: Cd79bIgb
Membrane Entity: Yes 
UniProt
Find proteins for P15530 (Mus musculus)
Explore P15530 
Go to UniProtKB:  P15530
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15530
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-16
    Type: Initial release
  • Version 1.1: 2022-12-14
    Changes: Database references
  • Version 1.2: 2022-12-21
    Changes: Database references
  • Version 1.3: 2023-02-01
    Changes: Database references
  • Version 1.4: 2024-03-13
    Changes: Data collection, Source and taxonomy