8E4C | pdb_00008e4c

IgM BCR fab truncated form

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DTRPM2e8e4cD01 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: TRPM2ECOD (v294.1)
CTRPM2e8e4cC01 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: TRPM2ECOD (v294.1)
A [auth B]TRPM2e8e4cB01 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: TRPM2ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain
PF00047Immunoglobulin domain (ig)Immunoglobulin domainMembers of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-prote ...Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions.
Domain
A [auth B],
B [auth A]		PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B-cell antigen receptor complex-associated protein beta chain
B-cell antigen receptor complex-associated protein alpha chain,Yellow fluorescent protein
A [auth B],
B [auth A]		Isoform 2 of Immunoglobulin heavy constant mu

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR013106Immunoglobulin V-set domainDomain
IPR003599Immunoglobulin domain subtypeDomain
IPR007110Immunoglobulin-like domainDomain
IPR003110Phosphorylated immunoreceptor signalling ITAMRepeat
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR013151Immunoglobulin-like beta-sandwich domainDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR003599Immunoglobulin domain subtypeDomain
IPR007110Immunoglobulin-like domainDomain
IPR003110Phosphorylated immunoreceptor signalling ITAMRepeat
IPR017938Riboflavin synthase-like beta-barrelHomologous Superfamily
IPR026017Lumazine-binding domainDomain
IPR001783Lumazine-binding proteinFamily
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
A [auth B],
B [auth A]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth B],
B [auth A]		IPR003597Immunoglobulin C1-setDomain
A [auth B],
B [auth A]		IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
A [auth B],
B [auth A]		IPR050380Immune Recognition and Response ModulatorsFamily
A [auth B],
B [auth A]		IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth B],
B [auth A]		IPR007110Immunoglobulin-like domainDomain

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
OPMTransmembraneBitopic proteinsT-cell and B-cell receptor complexesB-cell antigen receptor complex

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM