The cryo-EM structure of a biohybrid photosystem I photocatalyst reveals the locations of bound platinum nanoparticles
Gisriel, C.J., Malavath, T., Brudvig, G.W., Utschig, L.M.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Biological assembly 1 assigned by authors.
Macromolecule Content
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I P700 chlorophyll a apoprotein A1 | A, G, Y [auth a] | 755 | Parathermosynechococcus lividus | Mutation(s): 0  EC: 1.97.1.12 | |
UniProt | |||||
Find proteins for A0A2D2Q201 (Thermostichus lividus PCC 6715) Explore A0A2D2Q201  Go to UniProtKB:  A0A2D2Q201 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2D2Q201 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I P700 chlorophyll a apoprotein A2 | B, H, Z [auth b] | 741 | Parathermosynechococcus lividus | Mutation(s): 0  EC: 1.97.1.12 | |
UniProt | |||||
Find proteins for A0A2D2Q1Z9 (Thermostichus lividus PCC 6715) Explore A0A2D2Q1Z9  Go to UniProtKB:  A0A2D2Q1Z9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2D2Q1Z9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I iron-sulfur center | AA [auth c], C, N | 81 | Parathermosynechococcus lividus | Mutation(s): 0  EC: 1.97.1.12 | |
UniProt | |||||
Find proteins for A0A2D2Q1F9 (Thermostichus lividus PCC 6715) Explore A0A2D2Q1F9  Go to UniProtKB:  A0A2D2Q1F9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2D2Q1F9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit II | BA [auth d], D, O | 139 | Parathermosynechococcus lividus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2D2Q2Y6 (Thermostichus lividus PCC 6715) Explore A0A2D2Q2Y6  Go to UniProtKB:  A0A2D2Q2Y6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2D2Q2Y6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit IV | CA [auth e], E, P | 75 | Parathermosynechococcus lividus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2D2Q1I4 (Thermostichus lividus PCC 6715) Explore A0A2D2Q1I4  Go to UniProtKB:  A0A2D2Q1I4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2D2Q1I4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit III | DA [auth f], F, Q | 164 | Parathermosynechococcus lividus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2D2PYV7 (Thermostichus lividus PCC 6715) Explore A0A2D2PYV7  Go to UniProtKB:  A0A2D2PYV7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2D2PYV7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit VIII | EA [auth i], I, R | 40 | Parathermosynechococcus lividus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2D2Q0W5 (Thermostichus lividus PCC 6715) Explore A0A2D2Q0W5  Go to UniProtKB:  A0A2D2Q0W5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2D2Q0W5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit IX | FA [auth j], J, S | 43 | Parathermosynechococcus lividus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2D2PZG9 (Thermostichus lividus PCC 6715) Explore A0A2D2PZG9  Go to UniProtKB:  A0A2D2PZG9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2D2PZG9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit PsaK | GA [auth k], K, T | 83 | Parathermosynechococcus lividus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2D2Q0K8 (Thermostichus lividus PCC 6715) Explore A0A2D2Q0K8  Go to UniProtKB:  A0A2D2Q0K8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2D2Q0K8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit XI | HA [auth l], L, U | 155 | Parathermosynechococcus lividus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2D2Q0R7 (Thermostichus lividus PCC 6715) Explore A0A2D2Q0R7  Go to UniProtKB:  A0A2D2Q0R7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2D2Q0R7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit XII | IA [auth m], M, V | 31 | Parathermosynechococcus lividus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A3B7MIX8 (Thermosynechococcus sichuanensis E542) Explore A0A3B7MIX8  Go to UniProtKB:  A0A3B7MIX8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A3B7MIX8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Phosphorylase | JA [auth x], W, X | 36 | Parathermosynechococcus lividus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2D2Q2C6 (Thermostichus lividus PCC 6715) Explore A0A2D2Q2C6  Go to UniProtKB:  A0A2D2Q2C6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2D2Q2C6 | ||||
Sequence AnnotationsExpand | |||||
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Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | PHENIX | 1.20.1_4487: |
Funding Organization | Location | Grant Number |
---|---|---|
Department of Energy (DOE, United States) | United States | DE- AC02-06CH11357 |
Department of Energy (DOE, United States) | United States | DE-FG02-05ER15646 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM140174 |
RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.