Annotations: 8VU3

Cryo-EM structure of cyanobacterial PSI with bound platinum nanoparticles

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
T	V-set	e8vu3T1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
K	Cullin_Nedd8	e8vu3K01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Cullin_Nedd8	ECOD (v295)
GA [auth k]	V-set	e8vu3k1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
S	V-set	e8vu3S1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
J	Cullin_Nedd8	e8vu3J01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Cullin_Nedd8	ECOD (v295)
FA [auth j]	V-set	e8vu3j1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
R	V-set	e8vu3R1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
I	Cullin_Nedd8	e8vu3I01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Cullin_Nedd8	ECOD (v295)
EA [auth i]	V-set	e8vu3i1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
Q	V-set	e8vu3Q1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
F	Cullin_Nedd8	e8vu3F01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Cullin_Nedd8	ECOD (v295)
DA [auth f]	V-set	e8vu3f1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
P	V-set	e8vu3P1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
E	Cullin_Nedd8	e8vu3E01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Cullin_Nedd8	ECOD (v295)
CA [auth e]	V-set	e8vu3e1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
O	V-set	e8vu3O1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
D	Cullin_Nedd8	e8vu3D01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Cullin_Nedd8	ECOD (v295)
BA [auth d]	V-set	e8vu3d1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
N	V-set	e8vu3N1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
C	V-set	e8vu3C1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
AA [auth c]	V-set	e8vu3c1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
Z [auth b]	V-set	e8vu3b1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
H	V-set	e8vu3H1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
B	Cullin_Nedd8	e8vu3B01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Cullin_Nedd8	ECOD (v295)
X	V-set	e8vu3X1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
W	Cullin_Nedd8	e8vu3W01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Cullin_Nedd8	ECOD (v295)
JA [auth x]	V-set	e8vu3x1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
IA [auth m]	V-set	e8vu3m1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
V	V-set	e8vu3V1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
M	Cullin_Nedd8	e8vu3M01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Cullin_Nedd8	ECOD (v295)
U	V-set	e8vu3U1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
L	Cullin_Nedd8	e8vu3L01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Cullin_Nedd8	ECOD (v295)
HA [auth l]	V-set	e8vu3l1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
Y [auth a]	V-set	e8vu3a1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
G	V-set	e8vu3G1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
A	Cullin_Nedd8	e8vu3A01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Cullin_Nedd8	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
GA [auth k], K, T	Photosystem I reaction center subunit PsaK	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex photosystem photosystem I membrane protein complex
FA [auth j], J, S	Photosystem I reaction center subunit IX	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex photosystem photosystem I membrane protein complex
EA [auth i], I, R	Photosystem I reaction center subunit VIII	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex photosystem photosystem I membrane protein complex
DA [auth f], F, Q	Photosystem I reaction center subunit III	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex photosystem photosystem I membrane protein complex photosystem I reaction center
CA [auth e], E, P	Photosystem I reaction center subunit IV	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex photosystem photosystem I membrane protein complex photosystem I reaction center
BA [auth d], D, O	Photosystem I reaction center subunit II	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex photosystem photosystem I membrane protein complex photosystem I reaction center
AA [auth c], C, N	Photosystem I iron-sulfur center	oxidoreductase activity catalytic activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding electron transfer activity cation binding ion binding metal ion binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain metabolic process cellular process generation of precursor metabolites and energy photosynthetic electron transport in photosystem I	cellular anatomical structure endomembrane system intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery plasma membrane-derived thylakoid membrane organelle membraneless organelle cellular anatomical structure endomembrane system intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex photosystem photosystem I membrane protein complex
B, H, Z [auth b]	Photosystem I P700 chlorophyll a apoprotein A2	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding oxidoreductase activity catalytic activity chlorophyll binding tetrapyrrole binding iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding electron transfer activity	photosynthesis metabolic process cellular process	cellular anatomical structure endomembrane system intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery plasma membrane-derived thylakoid membrane organelle membraneless organelle cellular anatomical structure endomembrane system intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex photosystem photosystem I membrane protein complex
JA [auth x], W, X	Phosphorylase	-	-	-
IA [auth m], M, V	Photosystem I reaction center subunit XII	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex photosystem photosystem I membrane protein complex
HA [auth l], L, U	Photosystem I reaction center subunit XI	cation binding ion binding binding metal ion binding small molecule binding	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex photosystem photosystem I membrane protein complex photosystem I reaction center
A, G, Y [auth a]	Photosystem I P700 chlorophyll a apoprotein A1	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding oxidoreductase activity catalytic activity chlorophyll binding tetrapyrrole binding iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding electron transfer activity	photosynthesis metabolic process cellular process	cellular anatomical structure endomembrane system intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery plasma membrane-derived thylakoid membrane organelle membraneless organelle cellular anatomical structure endomembrane system intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex photosystem photosystem I membrane protein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
GA [auth k], K, T	IPR037101	Photosystem I reaction centre subunit PsaK	Homologous Superfamily
GA [auth k], K, T	IPR000549	Photosystem I reaction center subunit V/PsaK	Family
GA [auth k], K, T	IPR035982	Photosystem I reaction centre subunit PsaK superfamily	Homologous Superfamily
GA [auth k], K, T	IPR017492	Photosystem I reaction center subunit PsaK	Family
FA [auth j], J, S	IPR002615	Photosystem I PsaJ, reaction centre subunit IX	Family
FA [auth j], J, S	IPR036062	Photosystem I PsaJ, reaction centre subunit IX superfamily	Homologous Superfamily
EA [auth i], I, R	IPR036357	Photosystem I reaction centre subunit VIII superfamily	Homologous Superfamily
EA [auth i], I, R	IPR001302	Photosystem I reaction centre subunit VIII	Family
DA [auth f], F, Q	IPR036577	Photosystem I PsaF, reaction centre subunit III superfamily	Homologous Superfamily
DA [auth f], F, Q	IPR003666	Photosystem I PsaF, reaction centre subunit III	Family
CA [auth e], E, P	IPR008990	Electron transport accessory-like domain superfamily	Homologous Superfamily
CA [auth e], E, P	IPR003375	Photosystem I PsaE, reaction centre subunit IV	Family
BA [auth d], D, O	IPR003685	Photosystem I PsaD	Family
BA [auth d], D, O	IPR036579	Photosystem I, reaction centre subunit PsaD superfamily	Homologous Superfamily
AA [auth c], C, N	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
AA [auth c], C, N	IPR050157	Photosystem I iron-sulfur center	Family
AA [auth c], C, N	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
AA [auth c], C, N	IPR017491	Photosystem I protein PsaC	Family
B, H, Z [auth b]	IPR036408	Photosystem I PsaA/PsaB superfamily	Homologous Superfamily
B, H, Z [auth b]	IPR001280	Photosystem I PsaA/PsaB	Family
B, H, Z [auth b]	IPR006244	Photosystem I PsaB	Family
B, H, Z [auth b]	IPR020586	Photosystem I PsaA/PsaB, conserved site	Conserved Site
JA [auth x], W, X	IPR036243	Photosystem I PsaX superfamily	Homologous Superfamily
JA [auth x], W, X	IPR012986	Photosystem I PsaX	Family
IA [auth m], M, V	IPR010010	Photosystem I PsaM, reaction centre	Family
IA [auth m], M, V	IPR037279	Photosystem I PsaM, reaction centre superfamily	Homologous Superfamily
HA [auth l], L, U	IPR003757	Photosystem I PsaL, reaction centre subunit XI	Domain
HA [auth l], L, U	IPR022980	Photosystem I, reaction centre subunit XI	Family
HA [auth l], L, U	IPR036592	Photosystem I PsaL, reaction centre subunit XI superfamily	Homologous Superfamily
A, G, Y [auth a]	IPR036408	Photosystem I PsaA/PsaB superfamily	Homologous Superfamily
A, G, Y [auth a]	IPR001280	Photosystem I PsaA/PsaB	Family
A, G, Y [auth a]	IPR006243	Photosystem I PsaA	Family
A, G, Y [auth a]	IPR020586	Photosystem I PsaA/PsaB, conserved site	Conserved Site

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, AA [auth c], B, C, CA [auth e] A, AA [auth c], B, C, CA [auth e], DA [auth f], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth x], K, L, M, N, P, Q, R, S, T, U, V, W, X, Y [auth a], Z [auth b]	PDBTM	Annotated as membrane protein by PDBTM

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8VU3 | pdb_00008vu3

Cryo-EM structure of cyanobacterial PSI with bound platinum nanoparticles

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Membrane Protein Annotation: PDBTM PDBTM Database Homepage