8V11

Structure of a Saccharomyces cerevisiae Ipl1 peptide Bound to dwarf Ndc80 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.95 Å
  • R-Value Free: 0.327 
  • R-Value Work: 0.267 
  • R-Value Observed: 0.270 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

A communication hub for phosphoregulation of kinetochore-microtubule attachment

Zahm, J.A.Harrison, S.C.

(2024) Curr Biol 


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore protein NDC80
A, E
272Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: NDC80HEC1TID3YIL144W
UniProt
Find proteins for P40460 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P40460
Entity Groups  
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UniProt GroupP40460
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Ipl1/Nuf2 chimera protein
B, F
227Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: IPL1NUF2
UniProt
Find proteins for P33895 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P33895
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UniProt GroupP33895
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore protein SPC24
C, G
99Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: SPC24YMR117CYM9718.16C
UniProt
Find proteins for Q04477 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  Q04477
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UniProt GroupQ04477
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore protein SPC25
D, H
114Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: SPC25YER018C
UniProt
Find proteins for P40014 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40014 
Go to UniProtKB:  P40014
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UniProt GroupP40014
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.95 Å
  • R-Value Free: 0.327 
  • R-Value Work: 0.267 
  • R-Value Observed: 0.270 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 114.757α = 90
b = 114.757β = 90
c = 423.841γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
STARANISOdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-15
    Type: Initial release