8P2L

A CHIMERA construct containing human SARM1 ARM and SAM domains and C. elegans TIR domain.

  • Classification: HYDROLASE
  • Organism(s): Homo sapiens
  • Expression System: Homo sapiens
  • Mutation(s): No 

  • Deposited: 2023-05-16 Released: 2023-09-06 
  • Deposition Author(s): Isupov, M.N., Opatowsky, Y.
  • Funding Organization(s): Israel Science Foundation, United States - Israel Binational Science Foundation (BSF)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure-function analysis of ceTIR-1/hSARM1 explains the lack of Wallerian axonal degeneration in C. elegans.

Khazma, T.Grossman, A.Guez-Haddad, J.Feng, C.Dabas, H.Sain, R.Weitman, M.Zalk, R.Isupov, M.N.Hammarlund, M.Hons, M.Opatowsky, Y.

(2023) Cell Rep 42: 113026-113026

  • DOI: https://doi.org/10.1016/j.celrep.2023.113026
  • Primary Citation of Related Structures:  
    8P2L, 8P2M

  • PubMed Abstract: 

    Wallerian axonal degeneration (WD) does not occur in the nematode C. elegans, in contrast to other model animals. However, WD depends on the NADase activity of SARM1, a protein that is also expressed in C. elegans (ceSARM/ceTIR-1). We hypothesized that differences in SARM between species might exist and account for the divergence in WD. We first show that expression of the human (h)SARM1, but not ceTIR-1, in C. elegans neurons is sufficient to confer axon degeneration after nerve injury. Next, we determined the cryoelectron microscopy structure of ceTIR-1 and found that, unlike hSARM1, which exists as an auto-inhibited ring octamer, ceTIR-1 forms a readily active 9-mer. Enzymatically, the NADase activity of ceTIR-1 is substantially weaker (10-fold higher Km) than that of hSARM1, and even when fully active, it falls short of consuming all cellular NAD + . Our experiments provide insight into the molecular mechanisms and evolution of SARM orthologs and WD across species.


  • Organizational Affiliation

    The Mina & Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(+) hydrolase SARM1,NAD(+) hydrolase tir-1728Homo sapiensMutation(s): 0 
Gene Names: SARM1KIAA0524SAMD2SARMtir-1nsy-2F13B10.1
EC: 3.2.2.6 (PDB Primary Data), 3.2.2 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for Q6SZW1 (Homo sapiens)
Explore Q6SZW1 
Go to UniProtKB:  Q6SZW1
PHAROS:  Q6SZW1
GTEx:  ENSG00000004139 
Find proteins for Q86DA5 (Caenorhabditis elegans)
Explore Q86DA5 
Go to UniProtKB:  Q86DA5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ86DA5Q6SZW1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTREFMAC5
MODEL REFINEMENTUCSF ChimeraX
MODEL REFINEMENTISOLDE

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Israel Science FoundationIsrael1425/15
Israel Science FoundationIsrael909/19
United States - Israel Binational Science Foundation (BSF)United States2019150

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-06
    Type: Initial release