8P2L | pdb_00008p2l

A CHIMERA construct containing human SARM1 ARM and SAM domains and C. elegans TIR domain.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SPRY,PRY	e8p2lA1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: SPRY,PRY	ECOD (v294.1)
B	Cas_Csm6_HEPN	e8p2lB1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)
C	Cas_Csm6_HEPN	e8p2lC1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)
D	Cas_Csm6_HEPN	e8p2lD1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)
E	Cas_Csm6_HEPN	e8p2lE1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)
F	Cas_Csm6_HEPN	e8p2lF1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)
G	Cas_Csm6_HEPN	e8p2lG1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)
H	Cas_Csm6_HEPN	e8p2lH1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)
I [auth J]	Cas_Csm6_HEPN	e8p2lJ1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)
J [auth I]	Cas_Csm6_HEPN	e8p2lI1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)
K	Cas_Csm6_HEPN	e8p2lK1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)
N	Cas_Csm6_HEPN	e8p2lN1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)
O	Cas_Csm6_HEPN	e8p2lO1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)
P	Cas_Csm6_HEPN	e8p2lP1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)
M	Cas_Csm6_HEPN	e8p2lM1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)
L	Cas_Csm6_HEPN	e8p2lL1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cas_Csm6_HEPN	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	PF13676	TIR domain (TIR_2)	TIR domain	This is a family of Toll-like receptors.	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	PF07647	SAM domain (Sterile alpha motif) (SAM_2)	SAM domain (Sterile alpha motif)		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	NAD(+) hydrolase SARM1,NAD(+) hydrolase tir-1	protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity hydrolase activity, acting on glycosyl bonds NAD+ nucleosidase activity, cyclic ADP-ribose generating hydrolase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity NAD+ nucleosidase activity NADP+ nucleosidase activity identical protein binding protein binding binding small GTPase binding protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity hydrolase activity, acting on glycosyl bonds NAD+ nucleosidase activity, cyclic ADP-ribose generating hydrolase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity NAD+ nucleosidase activity NADP+ nucleosidase activity identical protein binding protein binding binding small GTPase binding enzyme binding GTPase binding kinase binding protein kinase binding	cellular component organization cell junction organization cellular process synapse organization cellular component organization or biogenesis modification of postsynaptic structure modification of synaptic structure response to stimulus response to stress response to wounding response to axon injury developmental process cellular developmental process cell differentiation cellular component organization cell junction organization cellular process synapse organization cellular component organization or biogenesis modification of postsynaptic structure modification of synaptic structure response to stimulus response to stress response to wounding response to axon injury developmental process cellular developmental process cell differentiation cellular response to stimulus positive regulation of response to biotic stimulus regulation of cellular process pattern recognition receptor signaling pathway toll-like receptor signaling pathway negative regulation of biological process regulation of signal transduction response to biotic stimulus cell communication immune response-activating signaling pathway positive regulation of immune response regulation of MyD88-independent toll-like receptor signaling pathway regulation of immune system process signal transduction positive regulation of immune system process innate immune response-activating signaling pathway regulation of biological process immune response response to other organism regulation of innate immune response response to external stimulus regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response activation of innate immune response regulation of immune response MyD88-independent toll-like receptor signaling pathway regulation of toll-like receptor signaling pathway activation of immune response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus signaling negative regulation of signaling positive regulation of biological process negative regulation of cell communication positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of response to stress innate immune response negative regulation of cellular process response to external biotic stimulus regulation of signaling positive regulation of innate immune response negative regulation of MyD88-independent toll-like receptor signaling pathway defense response negative regulation of response to stimulus biological regulation defense response to symbiont negative regulation of signal transduction negative regulation of toll-like receptor signaling pathway negative regulation of immune system process immune system process regulation of cell communication neuron apoptotic process regulation of apoptotic process regulation of programmed cell death cell death apoptotic process programmed cell death regulation of neuron apoptotic process cellular component disassembly regulation of synapse pruning regulation of cellular component organization cell junction disassembly synapse pruning regulation of synapse organization regulation of synapse structure or activity regulation of biological quality multicellular organismal process system process nervous system process response to hexose response to monosaccharide response to carbohydrate response to glucose response to chemical response to oxygen-containing compound multicellular organism development anatomical structure development nervous system development system development localization protein localization to organelle macromolecule localization protein localization to mitochondrion intracellular protein localization pyridine nucleotide catabolic process catabolic process organophosphate catabolic process nucleoside phosphate catabolic process nucleobase-containing compound metabolic process purine nucleotide metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process NAD+ catabolic process pyridine-containing compound metabolic process small molecule metabolic process phosphorus metabolic process nucleotide catabolic process NAD+ metabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process purine nucleotide catabolic process primary metabolic process purine-containing compound catabolic process nucleotide metabolic process nucleobase-containing compound catabolic process purine-containing compound metabolic process organophosphate metabolic process metabolic process pyridine-containing compound catabolic process regulation of neuron projection development regulation of developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis cell projection morphogenesis neuron differentiation dendrite development neuron projection morphogenesis regulation of dendrite morphogenesis regulation of anatomical structure morphogenesis plasma membrane bounded cell projection organization regulation of cell projection organization dendrite morphogenesis cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis regulation of dendrite development neuron development regulation of plasma membrane bounded cell projection organization cell fate specification cell fate commitment regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process cell-cell signaling defense response to bacterium response to bacterium serotonin metabolic process indole-containing compound biosynthetic process phenol-containing compound metabolic process indole-containing compound metabolic process phenol-containing compound biosynthetic process primary amino compound biosynthetic process serotonin biosynthetic process defense response to fungus response to fungus defense response to Gram-negative bacterium negative regulation of metabolic process negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of macromolecule metabolic process positive regulation of DNA-templated transcription RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription antibacterial innate immune response	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell surface cytosol somatodendritic compartment cell projection dendrite dendritic tree membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell surface cytosol somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection protein-containing complex synapse cell junction glutamatergic synapse neuromuscular junction extrinsic component of plasma membrane membrane plasma membrane synaptic membrane extrinsic component of synaptic membrane cell periphery plasma membrane region extrinsic component of membrane mitochondrial membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane axon polymeric cytoskeletal fiber intracellular membraneless organelle cytoskeleton membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton cell body neuron projection cytoplasm axon cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	IPR011989	Armadillo-like helical	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	IPR039184	Sterile alpha and TIR motif-containing protein 1	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	IPR001660	Sterile alpha motif domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	IPR011989	Armadillo-like helical	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	IPR039184	Sterile alpha and TIR motif-containing protein 1	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	IPR001660	Sterile alpha motif domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth I], K, L, M, N, O, P	Pharos: Q6SZW1	respiratory syncytial virus infectious disease age-related macular degeneration large cell medulloblastoma medulloblastoma amyotrophic lateral sclerosis lung carcinoma osteosarcoma wet macular degeneration hypertensive disorder malignant mesothelioma psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.