8P2L

A CHIMERA construct containing human SARM1 ARM and SAM domains and C. elegans TIR domain.


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.385
r_dihedral_angle_4_deg19.981
r_dihedral_angle_3_deg13.132
r_dihedral_angle_1_deg6.471
r_angle_refined_deg1.649
r_nbtor_refined0.293
r_nbd_refined0.205
r_chiral_restr0.128
r_xyhbond_nbd_refined0.07
r_ncsr_local_group_300.018
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.385
r_dihedral_angle_4_deg19.981
r_dihedral_angle_3_deg13.132
r_dihedral_angle_1_deg6.471
r_angle_refined_deg1.649
r_nbtor_refined0.293
r_nbd_refined0.205
r_chiral_restr0.128
r_xyhbond_nbd_refined0.07
r_ncsr_local_group_300.018
r_ncsr_local_group_430.018
r_ncsr_local_group_490.018
r_ncsr_local_group_340.017
r_ncsr_local_group_360.017
r_ncsr_local_group_400.017
r_ncsr_local_group_420.017
r_ncsr_local_group_440.017
r_ncsr_local_group_460.017
r_ncsr_local_group_520.017
r_ncsr_local_group_540.017
r_ncsr_local_group_560.017
r_ncsr_local_group_30.013
r_ncsr_local_group_70.013
r_ncsr_local_group_140.013
r_ncsr_local_group_160.013
r_ncsr_local_group_180.013
r_ncsr_local_group_210.013
r_ncsr_local_group_250.013
r_ncsr_local_group_260.013
r_ncsr_local_group_280.013
r_ncsr_local_group_10.012
r_ncsr_local_group_50.012
r_ncsr_local_group_80.012
r_ncsr_local_group_100.012
r_ncsr_local_group_120.012
r_ncsr_local_group_190.012
r_ncsr_local_group_230.012
r_ncsr_local_group_220.009
r_gen_planes_refined0.008
r_bond_refined_d0.007
r_ncsr_local_group_200.006
r_ncsr_local_group_270.006
r_ncsr_local_group_90.005
r_ncsr_local_group_130.005
r_ncsr_local_group_450.005
r_ncsr_local_group_110.004
r_ncsr_local_group_170.004
r_ncsr_local_group_20.003
r_ncsr_local_group_60.003
r_ncsr_local_group_150.003
r_ncsr_local_group_240.003
r_ncsr_local_group_310.003
r_ncsr_local_group_320.003
r_ncsr_local_group_330.003
r_ncsr_local_group_350.003
r_ncsr_local_group_370.003
r_ncsr_local_group_380.003
r_ncsr_local_group_410.003
r_ncsr_local_group_480.003
r_ncsr_local_group_500.003
r_ncsr_local_group_510.003
r_ncsr_local_group_530.003
r_ncsr_local_group_290.002
r_ncsr_local_group_390.002
r_ncsr_local_group_550.002
r_ncsr_local_group_40.001
r_ncsr_local_group_470.001
r_mcbond_it
r_mcangle_it
r_scbond_it
r_scangle_it
r_lrange_it
Sample
A CHIMERA construct containing human SARM1 ARM and SAM domains and C. elegans TIR domain.
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles136346
Reported Resolution (Å)2.68
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement SpaceRECIPROCAL
Refinement ProtocolFLEXIBLE FIT
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 (6k x 4k)
Electron Dose (electrons/Å**2)41.4
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)800
Maximum Defocus (nm)2800
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
IMAGE ACQUISITIONEPU
MODEL FITTINGCoot9.6
MODEL REFINEMENTREFMAC5
MODEL REFINEMENTUCSF ChimeraX
MODEL REFINEMENTISOLDE
INITIAL EULER ASSIGNMENTcryoSPARC
FINAL EULER ASSIGNMENTcryoSPARC
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION298564