Rotation mechanism of ATP synthases driven by ATP hydrolysis
Nakano, A., Yokoyama, K., Kishikawa, J., Nakanishi, A., Mitsuoka, K.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ATP synthase subunit alpha | 501 | Bacillus sp. PS3 | Mutation(s): 0  Gene Names: uncA, atpA EC: 7.1.2.2 | ||
UniProt | |||||
Find proteins for A0A0M3VGF9 (Bacillus sp. (strain PS3)) Explore A0A0M3VGF9  Go to UniProtKB:  A0A0M3VGF9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0M3VGF9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ATP synthase subunit beta | 484 | Bacillus sp. PS3 | Mutation(s): 0  Gene Names: uncD, atpD EC: 7.1.2.2 | ||
UniProt | |||||
Find proteins for P07677 (Bacillus sp. (strain PS3)) Explore P07677  Go to UniProtKB:  P07677 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P07677 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ATP synthase gamma chain | 284 | Bacillus sp. PS3 | Mutation(s): 0  Gene Names: uncG, atpG | ||
UniProt | |||||
Find proteins for A0A0M4TPJ7 (Bacillus sp. (strain PS3)) Explore A0A0M4TPJ7  Go to UniProtKB:  A0A0M4TPJ7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0M4TPJ7 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ATP (Subject of Investigation/LOI) Query on ATP | H [auth A], K [auth B], L [auth C], Q [auth E], T [auth F] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N | |||
ADP (Subject of Investigation/LOI) Query on ADP | P [auth D] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | |||
PO4 (Subject of Investigation/LOI) Query on PO4 | O [auth D] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
MG (Subject of Investigation/LOI) Query on MG | I [auth A] J [auth B] M [auth C] N [auth D] R [auth E] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | PHENIX | |
RECONSTRUCTION | RELION | 4.0 |
Funding Organization | Location | Grant Number |
---|---|---|
Japan Society for the Promotion of Science (JSPS) | Japan | 20H03231 |
Japan Society for the Promotion of Science (JSPS) | Japan | 20K06514 |
Japan Agency for Medical Research and Development (AMED) | Japan | JP17am0101001 |
Japan Society for the Promotion of Science (JSPS) | Japan | 20J00162 |