8H1D

Solid-state NMR Structure of Aquaporin Z in its Native Cellular Membranes


Experimental Data Snapshot

  • Method: SOLID-STATE NMR
  • Conformers Calculated: 1000 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Solid-state NMR structure determination of a membrane protein in E. coli cellular inner membrane.

Xie, H.Zhao, Y.Zhao, W.Chen, Y.Liu, M.Yang, J.

(2023) Sci Adv 9: eadh4168-eadh4168

  • DOI: https://doi.org/10.1126/sciadv.adh4168
  • Primary Citation of Related Structures:  
    8H1D

  • PubMed Abstract: 

    Structure determination of membrane proteins in native cellular membranes is critical to precisely reveal their structures in physiological conditions. However, it remains challenging for solid-state nuclear magnetic resonance (ssNMR) due to the low sensitivity and high complexity of ssNMR spectra of cellular membranes. Here, we present the structure determination of aquaporin Z (AqpZ) by ssNMR in Escherichia coli inner membranes. To enhance the signal sensitivity of AqpZ, we optimized protein overexpression and removed outer membrane components. To suppress the interference of background proteins, we used a "dual-media" expression approach and antibiotic treatment. Using 1017 distance restraints obtained from two-dimensional 13 C- 13 C spectra based on the complete chemical shift assignments, the 1.7-Å ssNMR structure of AqpZ is determined in E. coli inner membranes. This cellular ssNMR structure determination paves the way for analyzing the atomic structural details for membrane proteins in native cellular membranes.


  • Organizational Affiliation

    National Center for Magnetic Resonance in Wuhan, Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, P. R. China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Aquaporin Z243Escherichia coli BL21(DE3)Mutation(s): 0 
Gene Names: aqpZECBD_2719
Membrane Entity: Yes 
UniProt
Find proteins for P60844 (Escherichia coli (strain K12))
Explore P60844 
Go to UniProtKB:  P60844
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP60844
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLID-STATE NMR
  • Conformers Calculated: 1000 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China21927801
National Natural Science Foundation of China (NSFC)China21904136
National Natural Science Foundation of China (NSFC)China21921004
National Natural Science Foundation of China (NSFC)China22004124
Chinese Academy of SciencesChinaYJKYYQ20190032

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-09
    Type: Initial release
  • Version 1.1: 2023-11-15
    Changes: Data collection, Database references