8H1D
Solid-state NMR Structure of Aquaporin Z in its Native Cellular Membranes
SOLID-STATE NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NCA | 29.4 % w/w [U-13C; U-15N] aquaporin Z | 5 mM Tris-Cl pH 8.0 | 1 M | 8.0 | 1 atm | 298 | Bruker AVANCE III 800 |
2 | 2D DARR | 29.4 % w/w [U-13C; U-15N] aquaporin Z | 5 mM Tris-Cl pH 8.0 | 1 M | 8.0 | 1 atm | 298 | Bruker AVANCE III 800 |
3 | 3D NCACX | 29.4 % w/w [U-13C; U-15N] aquaporin Z | 5 mM Tris-Cl pH 8.0 | 1 M | 8.0 | 1 atm | 298 | Bruker AVANCE III 800 |
4 | 3D NCOCX | 29.4 % w/w [U-13C; U-15N] aquaporin Z | 5 mM Tris-Cl pH 8.0 | 1 M | 8.0 | 1 atm | 298 | Bruker AVANCE III 800 |
5 | 3D CONCA | 29.4 % w/w [U-13C; U-15N] aquaporin Z | 5 mM Tris-Cl pH 8.0 | 1 M | 8.0 | 1 atm | 298 | Bruker AVANCE III 800 |
6 | 2D 100ms CORD | 29.4 % w/w [U-13C; U-15N] aquaporin Z | 5 mM Tris-Cl pH 8.0 | 1 M | 8.0 | 1 atm | 298 | Bruker AVANCE III 800 |
8 | 2D 500ms CORD | 29.4 % w/w [U-13C; U-15N] aquaporin Z | 5 mM Tris-Cl pH 8.0 | 1 M | 8.0 | 1 atm | 298 | Bruker AVANCE III 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry | We calculated 1000 monomer structures using 1007 distance restraints, 214 angle restraints predicted from TALOS+ using assigned 15N and 13C chemical shifts, and 132 intrahelical hydrogen bonds predicted from both the chemical shift index and TALOS+. | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 1000 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | NMRFAM-SPARKY | 2.6 | T. D. Goddard and D. G. Kneller |
2 | structure calculation | X-PLOR NIH | 2.47 | Schwieters, Kuszewski, Tjandra and Clore |
3 | collection | TopSpin | 3.6 | Bruker Biospin |
4 | processing | NMRPipe | 3.0 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |