8BJY

Engineered Fructosyl Peptide Oxidase - X02B mutant

• PDB DOI: https://doi.org/10.2210/pdb8BJY/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Parastagonospora nodorum SN15
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-11-08 Released: 2023-11-22 
• Deposition Author(s): Estiri, H., Bhattacharya, S., Rodriguez-Buitrago, J.A., Parisini, E.
• Funding Organization(s): Other government

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.48 Å
• R-Value Free: 0.215 
• R-Value Work: 0.189 

Literature

Engineered Fructosyl Peptide Oxidase - X02B mutant

Estiri, H., Bhattacharya, S., Rodriguez-Buitrago, J.A., Parisini, E.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 49.12 kDa 
• Atom Count: 3,762 
• Modelled Residue Count: 427 
• Deposited Residue Count: 432 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fructosyl Peptide Oxidase mutant (X02B)	A	432	Parastagonospora nodorum SN15	Mutation(s): 0  Gene Names: SNOG_08398
UniProt
Find proteins for Q0UIL6 (Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)) Explore Q0UIL6  Go to UniProtKB:  Q0UIL6

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FAD (Subject of Investigation/LOI)	C [auth A]	FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N
GOL	B [auth A], D [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.48 Å
• R-Value Free: 0.215 
• R-Value Work: 0.189 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.112	α = 90
b = 88.493	β = 90
c = 90.938	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
autoPROC	data processing
Aimless	data scaling
Coot	model building
MOLREP	phasing
Coot	model building
XDS	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-11-22 
Deposition Author(s): Estiri, H., Bhattacharya, S., Rodriguez-Buitrago, J.A., Parisini, E.

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Funding Organization	Location	Grant Number
Other government		lzp-2020/2-0013

Revision History  

• Version 1.0: 2023-11-22
  Type: Initial release