8BJY

Engineered Fructosyl Peptide Oxidase - X02B mutant

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	293	PEG 20000 16-26%, MES 0.1M pH 6.5

Crystal Properties
Matthews coefficient	Solvent content
2.64	53.36

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 63.112	α = 90
b = 88.493	β = 90
c = 90.938	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 XE 16M		2022-07-30	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04	0.9537	Diamond	I04

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.475	63.421	96	0.067	0.07	16.7	12.7		82805

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rrim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.475	1.501	100		0.4		11.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6Y4J	1.475	63.421	80871	4009	93.716	0.191	0.1893	0.2149	26.915

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.441			-0.256		-1.184

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.566
r_dihedral_angle_2_deg	16.113
r_dihedral_angle_3_deg	13.669
r_lrange_it	7.985
r_lrange_other	7.889
r_dihedral_angle_1_deg	7.263
r_scangle_it	5.569
r_scangle_other	5.568
r_mcangle_other	3.878
r_mcangle_it	3.875
r_scbond_it	3.801
r_scbond_other	3.8
r_mcbond_it	2.69
r_mcbond_other	2.689
r_angle_refined_deg	1.697
r_angle_other_deg	0.582
r_symmetry_nbd_refined	0.449
r_nbd_other	0.289
r_symmetry_xyhbond_nbd_refined	0.257
r_nbd_refined	0.225
r_symmetry_nbd_other	0.19
r_nbtor_refined	0.178
r_xyhbond_nbd_refined	0.176
r_xyhbond_nbd_other	0.089
r_chiral_restr	0.086
r_symmetry_nbtor_other	0.079
r_gen_planes_refined	0.011
r_bond_refined_d	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3342
Nucleic Acid Atoms
Solvent Atoms	333
Heterogen Atoms	65

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data processing
Aimless	data scaling
Coot	model building
MOLREP	phasing
Coot	model building
XDS	data reduction