8B4H

IstA transposase cleaved donor complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.35 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.0 of the entry. See complete history


Literature

IS21 family transposase cleaved donor complex traps two right-handed superhelical crossings.

Spinola-Amilibia, M.Araujo-Bazan, L.de la Gandara, A.Berger, J.M.Arias-Palomo, E.

(2023) Nat Commun 14: 2335-2335

  • DOI: https://doi.org/10.1038/s41467-023-38071-x
  • Primary Citation of Related Structures:  
    8B4H

  • PubMed Abstract: 

    Transposases are ubiquitous enzymes that catalyze DNA rearrangement events with broad impacts on gene expression, genome evolution, and the spread of drug-resistance in bacteria. Here, we use biochemical and structural approaches to define the molecular determinants by which IstA, a transposase present in the widespread IS21 family of mobile elements, catalyzes efficient DNA transposition. Solution studies show that IstA engages the transposon terminal sequences to form a high-molecular weight complex and promote DNA integration. A 3.4 Å resolution structure of the transposase bound to transposon ends corroborates our biochemical findings and reveals that IstA self-assembles into a highly intertwined tetramer that synapses two supercoiled terminal inverted repeats. The three-dimensional organization of the IstA•DNA cleaved donor complex reveals remarkable similarities with retroviral integrases and classic transposase systems, such as Tn7 and bacteriophage Mu, and provides insights into IS21 transposition.


  • Organizational Affiliation

    Department of Structural & Chemical Biology, Centro de Investigaciones Biológicas Margarita Salas, CSIC, Madrid, 28040, Spain.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative transposase for insertion sequence element IS5376
A, B, C, D
406Geobacillus stearothermophilusMutation(s): 0 
UniProt
Find proteins for Q45618 (Geobacillus stearothermophilus)
Explore Q45618 
Go to UniProtKB:  Q45618
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ45618
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains LengthOrganismImage
DNA (57-MER) / right IS21 transposon end (insertion sequence IS5376)
E, G
60Geobacillus stearothermophilus
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains LengthOrganismImage
DNA (55-MER) / right IS21 transposon end (insertion sequence IS5376)
F, H
55Geobacillus stearothermophilus
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.35 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX1.19

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Spanish Ministry of Science, Innovation, and UniversitiesSpainPID2020-120275GB-I00
Spanish Ministry of Science, Innovation, and UniversitiesSpainBFU2017-89143-P

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-03
    Type: Initial release