8ALY

Cryo-EM structure of human tankyrase 2 SAM-PARP filament (G1032W mutant)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.98 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural basis of tankyrase activation by polymerization.

Pillay, N.Mariotti, L.Zaleska, M.Inian, O.Jessop, M.Hibbs, S.Desfosses, A.Hopkins, P.C.R.Templeton, C.M.Beuron, F.Morris, E.P.Guettler, S.

(2022) Nature 612: 162-169

  • DOI: https://doi.org/10.1038/s41586-022-05449-8
  • Primary Citation of Related Structures:  
    8ALY

  • PubMed Abstract: 

    The poly-ADP-ribosyltransferase tankyrase (TNKS, TNKS2) controls a wide range of disease-relevant cellular processes, including WNT-β-catenin signalling, telomere length maintenance, Hippo signalling, DNA damage repair and glucose homeostasis 1,2 . This has incentivized the development of tankyrase inhibitors. Notwithstanding, our knowledge of the mechanisms that control tankyrase activity has remained limited. Both catalytic and non-catalytic functions of tankyrase depend on its filamentous polymerization 3-5 . Here we report the cryo-electron microscopy reconstruction of a filament formed by a minimal active unit of tankyrase, comprising the polymerizing sterile alpha motif (SAM) domain and its adjacent catalytic domain. The SAM domain forms a novel antiparallel double helix, positioning the protruding catalytic domains for recurring head-to-head and tail-to-tail interactions. The head interactions are highly conserved among tankyrases and induce an allosteric switch in the active site within the catalytic domain to promote catalysis. Although the tail interactions have a limited effect on catalysis, they are essential to tankyrase function in WNT-β-catenin signalling. This work reveals a novel SAM domain polymerization mode, illustrates how supramolecular assembly controls catalytic and non-catalytic functions, provides important structural insights into the regulation of a non-DNA-dependent poly-ADP-ribosyltransferase and will guide future efforts to modulate tankyrase and decipher its contribution to disease mechanisms.


  • Organizational Affiliation

    Division of Structural Biology, The Institute of Cancer Research (ICR), London, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Poly [ADP-ribose] polymerase tankyrase-2299Homo sapiensMutation(s): 1 
Gene Names: TNKS2PARP5BTANK2TNKL
EC: 2.4.2.30 (PDB Primary Data), 2.4.2 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H2K2 (Homo sapiens)
Explore Q9H2K2 
Go to UniProtKB:  Q9H2K2
PHAROS:  Q9H2K2
GTEx:  ENSG00000107854 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H2K2
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN (Subject of Investigation/LOI)
Query on ZN

Download Ideal Coordinates CCD File 
AA [auth D]
BA [auth C]
CA [auth B]
DA [auth A]
EA [auth O]
AA [auth D],
BA [auth C],
CA [auth B],
DA [auth A],
EA [auth O],
FA [auth T],
GA [auth S],
HA [auth R],
IA [auth Q],
JA [auth P],
KA [auth N],
LA [auth M],
MA [auth L],
NA [auth K],
U [auth E],
V [auth J],
W [auth I],
X [auth H],
Y [auth G],
Z [auth F]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.98 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.08
MODEL REFINEMENTPHENIX1.18.2

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Cancer Research UKUnited KingdomC47521/A28286
Wellcome TrustUnited Kingdom214311/Z/18/Z
The Institute of Cancer Research (ICR)United Kingdomn.a.
The Lister Institute of Preventive MedicineUnited Kingdomn.a.

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-16
    Type: Initial release
  • Version 1.1: 2022-12-07
    Changes: Data collection, Database references
  • Version 1.2: 2022-12-14
    Changes: Database references