8ALY
Cryo-EM structure of human tankyrase 2 SAM-PARP filament (G1032W mutant)
ELECTRON MICROSCOPY
Refinement
RMS Deviations | |
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Key | Refinement Restraint Deviation |
f_dihedral_angle_d | 19.041 |
f_angle_d | 0.547 |
f_chiral_restr | 0.044 |
f_bond_d | 0.005 |
f_plane_restr | 0.004 |
Sample |
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TNKS2 SAM-PARP (867-1162) filament |
Specimen Preparation | |
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Sample Aggregation State | FILAMENT |
Vitrification Instrument | FEI VITROBOT MARK IV |
Cryogen Name | ETHANE |
Sample Vitrification Details |
3D Reconstruction | |
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Reconstruction Method | HELICAL |
Number of Particles | 139880 |
Reported Resolution (Å) | 2.98 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | HELICAL |
Axial Symmetry | D1 |
Axial Rise | 13.6 |
Angular Rotation | -52.3 |
Map-Model Fitting and Refinement | |||||
---|---|---|---|---|---|
Id | 1 (5NWG, 5JRT) | ||||
Refinement Space | REAL | ||||
Refinement Protocol | FLEXIBLE FIT | ||||
Refinement Target | FSC | ||||
Overall B Value | 7.41 | ||||
Fitting Procedure | |||||
Details |
Data Acquisition | |||||||||
---|---|---|---|---|---|---|---|---|---|
Detector Type | GATAN K2 SUMMIT (4k x 4k) | GATAN K3 (6k x 4k) | |||||||
Electron Dose (electrons/Å**2) | 40 | 40 |
Imaging Experiment | 1 |
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Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | TFS KRIOS |
Minimum Defocus (nm) | 1200 |
Maximum Defocus (nm) | 3500 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | 2.7 |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
Nominal Magnification | 81000 |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 |
Imaging Details |
EM Software | ||
---|---|---|
Task | Software Package | Version |
IMAGE ACQUISITION | EPU | |
CTF CORRECTION | RELION | 3.08 |
MODEL FITTING | UCSF Chimera | 1.14 |
MODEL FITTING | Coot | 0.9 |
CLASSIFICATION | RELION | 3.08 |
RECONSTRUCTION | RELION | 3.08 |
MODEL REFINEMENT | PHENIX | 1.18.2 |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
PHASE FLIPPING AND AMPLITUDE CORRECTION | 188925 |