7WI4

Cryo-EM structure of E.Coli FtsH protease cytosolic domains


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Cryo-EM structure of the entire FtsH-HflKC AAA protease complex.

Qiao, Z.Yokoyama, T.Yan, X.F.Beh, I.T.Shi, J.Basak, S.Akiyama, Y.Gao, Y.G.

(2022) Cell Rep 39: 110890-110890

  • DOI: https://doi.org/10.1016/j.celrep.2022.110890
  • Primary Citation of Related Structures:  
    7WI3, 7WI4

  • PubMed Abstract: 

    The membrane-bound AAA protease FtsH is the key player controlling protein quality in bacteria. Two single-pass membrane proteins, HflK and HflC, interact with FtsH to modulate its proteolytic activity. Here, we present structure of the entire FtsH-HflKC complex, comprising 12 copies of both HflK and HflC, all of which interact reciprocally to form a cage, as well as four FtsH hexamers with periplasmic domains and transmembrane helices enclosed inside the cage and cytoplasmic domains situated at the base of the cage. FtsH K61/D62/S63 in the β2-β3 loop in the periplasmic domain directly interact with HflK, contributing to complex formation. Pull-down and in vivo enzymatic activity assays validate the importance of the interacting interface for FtsH-HflKC complex formation. Structural comparison with the substrate-bound human m-AAA protease AFG3L2 offers implications for the HflKC cage in modulating substrate access to FtsH. Together, our findings provide a better understanding of FtsH-type AAA protease holoenzyme assembly and regulation.


  • Organizational Affiliation

    School of Biological Sciences, Nanyang Technological University, Singapore 637551, Singapore; NTU Institute of Structural Biology, Nanyang Technological University, Singapore 639798, Singapore.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-dependent zinc metalloprotease FtsH644Escherichia coli K-12Mutation(s): 2 
Gene Names: ftsHhflBmrsCstdtolZb3178JW3145
EC: 3.4.24
UniProt
Find proteins for P0AAI3 (Escherichia coli (strain K12))
Explore P0AAI3 
Go to UniProtKB:  P0AAI3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AAI3
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ANP
Query on ANP

Download Ideal Coordinates CCD File 
G [auth A]
J [auth D]
M [auth E]
P [auth F]
S [auth B]
G [auth A],
J [auth D],
M [auth E],
P [auth F],
S [auth B],
V [auth C]
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
H [auth A]
K [auth D]
N [auth E]
Q [auth F]
T [auth B]
H [auth A],
K [auth D],
N [auth E],
Q [auth F],
T [auth B],
W [auth C]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
I [auth A]
L [auth D]
O [auth E]
R [auth F]
U [auth B]
I [auth A],
L [auth D],
O [auth E],
R [auth F],
U [auth B],
X [auth C]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Education (MoE, Singapore)Singapore--

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-01
    Type: Initial release
  • Version 1.1: 2022-06-08
    Changes: Database references
  • Version 1.2: 2022-06-15
    Changes: Database references