7XQI

Hemichannel-focused structure of C-terminal truncated connexin43/Cx43/GJA1 gap junction intercellular channel in POPE nanodiscs (FIN conformation)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Conformational changes in the human Cx43/GJA1 gap junction channel visualized using cryo-EM.

Lee, H.J.Cha, H.J.Jeong, H.Lee, S.N.Lee, C.W.Kim, M.Yoo, J.Woo, J.S.

(2023) Nat Commun 14: 931-931

  • DOI: https://doi.org/10.1038/s41467-023-36593-y
  • Primary Citation of Related Structures:  
    7F92, 7F93, 7F94, 7XQ9, 7XQB, 7XQD, 7XQF, 7XQG, 7XQH, 7XQI, 7XQJ

  • PubMed Abstract: 

    Connexin family proteins assemble into hexameric hemichannels in the cell membrane. The hemichannels dock together between two adjacent membranes to form gap junction intercellular channels (GJIChs). We report the cryo-electron microscopy structures of Cx43 GJICh, revealing the dynamic equilibrium state of various channel conformations in detergents and lipid nanodiscs. We identify three different N-terminal helix conformations of Cx43-gate-covering (GCN), pore-lining (PLN), and flexible intermediate (FIN)-that are randomly distributed in purified GJICh particles. The conformational equilibrium shifts to GCN by cholesteryl hemisuccinates and to PLN by C-terminal truncations and at varying pH. While GJIChs that mainly comprise GCN protomers are occluded by lipids, those containing conformationally heterogeneous protomers show markedly different pore sizes. We observe an α-to-π-helix transition in the first transmembrane helix, which creates a side opening to the membrane in the FIN and PLN conformations. This study provides basic structural information to understand the mechanisms of action and regulation of Cx43 GJICh.


  • Organizational Affiliation

    Department of Life Sciences, Korea University, Seoul, 02841, Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gap junction alpha-1 protein
A, B, C, D, E
A, B, C, D, E, F
257Homo sapiensMutation(s): 0 
Gene Names: GJA1GJAL
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P17302 (Homo sapiens)
Explore P17302 
Go to UniProtKB:  P17302
PHAROS:  P17302
GTEx:  ENSG00000152661 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17302
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic OfNRF-2018R1C1B6004447

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-25
    Type: Initial release
  • Version 1.1: 2023-05-03
    Changes: Database references