7XQD

Structure of C-terminal truncated connexin43/Cx43/GJA1 gap junction intercellular channel in POPE/CHS nanodiscs (C1 symmetry)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Conformational changes in the human Cx43/GJA1 gap junction channel visualized using cryo-EM.

Lee, H.J.Cha, H.J.Jeong, H.Lee, S.N.Lee, C.W.Kim, M.Yoo, J.Woo, J.S.

(2023) Nat Commun 14: 931-931

  • DOI: https://doi.org/10.1038/s41467-023-36593-y
  • Primary Citation of Related Structures:  
    7F92, 7F93, 7F94, 7XQ9, 7XQB, 7XQD, 7XQF, 7XQG, 7XQH, 7XQI, 7XQJ

  • PubMed Abstract: 

    Connexin family proteins assemble into hexameric hemichannels in the cell membrane. The hemichannels dock together between two adjacent membranes to form gap junction intercellular channels (GJIChs). We report the cryo-electron microscopy structures of Cx43 GJICh, revealing the dynamic equilibrium state of various channel conformations in detergents and lipid nanodiscs. We identify three different N-terminal helix conformations of Cx43-gate-covering (GCN), pore-lining (PLN), and flexible intermediate (FIN)-that are randomly distributed in purified GJICh particles. The conformational equilibrium shifts to GCN by cholesteryl hemisuccinates and to PLN by C-terminal truncations and at varying pH. While GJIChs that mainly comprise GCN protomers are occluded by lipids, those containing conformationally heterogeneous protomers show markedly different pore sizes. We observe an α-to-π-helix transition in the first transmembrane helix, which creates a side opening to the membrane in the FIN and PLN conformations. This study provides basic structural information to understand the mechanisms of action and regulation of Cx43 GJICh.


  • Organizational Affiliation

    Department of Life Sciences, Korea University, Seoul, 02841, Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gap junction alpha-1 protein
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
257Homo sapiensMutation(s): 0 
Gene Names: GJA1GJAL
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P17302 (Homo sapiens)
Explore P17302 
Go to UniProtKB:  P17302
PHAROS:  P17302
GTEx:  ENSG00000152661 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17302
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PTY
Query on PTY

Download Ideal Coordinates CCD File 
IA [auth B]
IB [auth D]
ID [auth H]
IE [auth J]
JC [auth F]
IA [auth B],
IB [auth D],
ID [auth H],
IE [auth J],
JC [auth F],
JF [auth L],
LA [auth B],
LB [auth D],
LD [auth H],
LE [auth J],
Q [auth A],
QC [auth G],
T [auth A],
TC [auth G],
VA [auth C],
VB [auth E],
VD [auth I],
VE [auth K],
YA [auth C],
YB [auth E],
YD [auth I],
YE [auth K],
ZB [auth F],
ZE [auth L]
PHOSPHATIDYLETHANOLAMINE
C40 H80 N O8 P
NJGIRBISCGPRPF-KXQOOQHDSA-N
Y01 (Subject of Investigation/LOI)
Query on Y01

Download Ideal Coordinates CCD File 
JA [auth B]
JB [auth D]
JD [auth H]
JE [auth J]
KA [auth B]
JA [auth B],
JB [auth D],
JD [auth H],
JE [auth J],
KA [auth B],
KB [auth D],
KC [auth F],
KD [auth H],
KE [auth J],
KF [auth L],
LC [auth F],
LF [auth L],
R [auth A],
RC [auth G],
S [auth A],
SC [auth G],
WA [auth C],
WB [auth E],
WD [auth I],
WE [auth K],
XA [auth C],
XB [auth E],
XD [auth I],
XE [auth K]
CHOLESTEROL HEMISUCCINATE
C31 H50 O4
WLNARFZDISHUGS-MIXBDBMTSA-N
C14
Query on C14

Download Ideal Coordinates CCD File 
AA [auth B]
AB [auth D]
AC [auth F]
AD [auth H]
AE [auth J]
AA [auth B],
AB [auth D],
AC [auth F],
AD [auth H],
AE [auth J],
AF [auth L],
BA [auth B],
BB [auth D],
BC [auth F],
BD [auth H],
BE [auth J],
BF [auth L],
CA [auth B],
CB [auth D],
CC [auth F],
CD [auth H],
CE [auth J],
CF [auth L],
DA [auth B],
DB [auth D],
DC [auth F],
DD [auth H],
DE [auth J],
DF [auth L],
EA [auth B],
EB [auth D],
EC [auth F],
ED [auth H],
EE [auth J],
EF [auth L],
FA [auth B],
FB [auth D],
FC [auth F],
FD [auth H],
FE [auth J],
FF [auth L],
GA [auth B],
GB [auth D],
GC [auth F],
GD [auth H],
GE [auth J],
GF [auth L],
HA [auth B],
HB [auth D],
HC [auth F],
HD [auth H],
HE [auth J],
HF [auth L],
IC [auth F],
IF [auth L],
M [auth A],
MA [auth C],
MB [auth E],
MC [auth G],
MD [auth I],
ME [auth K],
N [auth A],
NA [auth C],
NB [auth E],
NC [auth G],
ND [auth I],
NE [auth K],
O [auth A],
OA [auth C],
OB [auth E],
OC [auth G],
OD [auth I],
OE [auth K],
P [auth A],
PA [auth C],
PB [auth E],
PC [auth G],
PD [auth I],
PE [auth K],
QA [auth C],
QB [auth E],
QD [auth I],
QE [auth K],
RA [auth C],
RB [auth E],
RD [auth I],
RE [auth K],
SA [auth C],
SB [auth E],
SD [auth I],
SE [auth K],
TA [auth C],
TB [auth E],
TD [auth I],
TE [auth K],
U [auth A],
UA [auth C],
UB [auth E],
UC [auth G],
UD [auth I],
UE [auth K],
V [auth A],
VC [auth G],
W [auth A],
WC [auth G],
X [auth A],
XC [auth G],
Y [auth A],
YC [auth G],
Z [auth B],
ZA [auth D],
ZC [auth H],
ZD [auth J]
TETRADECANE
C14 H30
BGHCVCJVXZWKCC-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic OfNRF-2018R1C1B6004447

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-22
    Type: Initial release
  • Version 1.1: 2023-05-03
    Changes: Database references