7XQB

Structure of connexin43/Cx43/GJA1 gap junction intercellular channel in POPE/CHS nanodiscs at pH ~8.0


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Conformational changes in the human Cx43/GJA1 gap junction channel visualized using cryo-EM.

Lee, H.J.Cha, H.J.Jeong, H.Lee, S.N.Lee, C.W.Kim, M.Yoo, J.Woo, J.S.

(2023) Nat Commun 14: 931-931

  • DOI: https://doi.org/10.1038/s41467-023-36593-y
  • Primary Citation of Related Structures:  
    7F92, 7F93, 7F94, 7XQ9, 7XQB, 7XQD, 7XQF, 7XQG, 7XQH, 7XQI, 7XQJ

  • PubMed Abstract: 

    Connexin family proteins assemble into hexameric hemichannels in the cell membrane. The hemichannels dock together between two adjacent membranes to form gap junction intercellular channels (GJIChs). We report the cryo-electron microscopy structures of Cx43 GJICh, revealing the dynamic equilibrium state of various channel conformations in detergents and lipid nanodiscs. We identify three different N-terminal helix conformations of Cx43-gate-covering (GCN), pore-lining (PLN), and flexible intermediate (FIN)-that are randomly distributed in purified GJICh particles. The conformational equilibrium shifts to GCN by cholesteryl hemisuccinates and to PLN by C-terminal truncations and at varying pH. While GJIChs that mainly comprise GCN protomers are occluded by lipids, those containing conformationally heterogeneous protomers show markedly different pore sizes. We observe an α-to-π-helix transition in the first transmembrane helix, which creates a side opening to the membrane in the FIN and PLN conformations. This study provides basic structural information to understand the mechanisms of action and regulation of Cx43 GJICh.


  • Organizational Affiliation

    Department of Life Sciences, Korea University, Seoul, 02841, Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gap junction alpha-1 protein382Homo sapiensMutation(s): 0 
Gene Names: GJA1GJAL
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P17302 (Homo sapiens)
Explore P17302 
Go to UniProtKB:  P17302
PHAROS:  P17302
GTEx:  ENSG00000152661 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17302
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PTY
Query on PTY

Download Ideal Coordinates CCD File 
BB [auth B]
DC [auth D]
HA [auth G]
HE [auth I]
JF [auth K]
BB [auth B],
DC [auth D],
HA [auth G],
HE [auth I],
JF [auth K],
KF [auth L],
OB [auth C],
RC [auth E],
SC [auth F],
T [auth A],
TD [auth H],
VE [auth J]
PHOSPHATIDYLETHANOLAMINE
C40 H80 N O8 P
NJGIRBISCGPRPF-KXQOOQHDSA-N
Y01 (Subject of Investigation/LOI)
Query on Y01

Download Ideal Coordinates CCD File 
AB [auth B]
BC [auth D]
CC [auth D]
ED [auth F]
FA [auth G]
AB [auth B],
BC [auth D],
CC [auth D],
ED [auth F],
FA [auth G],
FD [auth F],
FE [auth I],
GA [auth G],
GE [auth I],
HF [auth K],
IF [auth K],
MB [auth C],
NB [auth C],
PC [auth E],
QC [auth E],
R [auth A],
RD [auth H],
S [auth A],
SD [auth H],
TE [auth J],
UE [auth J],
WF [auth L],
XF [auth L],
ZA [auth B]
CHOLESTEROL HEMISUCCINATE
C31 H50 O4
WLNARFZDISHUGS-MIXBDBMTSA-N
C14
Query on C14

Download Ideal Coordinates CCD File 
AA [auth G]
AC [auth D]
AD [auth F]
AE [auth I]
AF [auth K]
AA [auth G],
AC [auth D],
AD [auth F],
AE [auth I],
AF [auth K],
BA [auth G],
BD [auth F],
BE [auth I],
BF [auth K],
CA [auth G],
CB [auth C],
CD [auth F],
CE [auth I],
CF [auth K],
DA [auth G],
DB [auth C],
DD [auth F],
DE [auth I],
DF [auth K],
EA [auth G],
EB [auth C],
EC [auth E],
EE [auth I],
EF [auth K],
FB [auth C],
FC [auth E],
FF [auth K],
GB [auth C],
GC [auth E],
GD [auth H],
GF [auth K],
HB [auth C],
HC [auth E],
HD [auth H],
IA [auth G],
IB [auth C],
IC [auth E],
ID [auth H],
IE [auth J],
JA [auth G],
JB [auth C],
JC [auth E],
JD [auth H],
JE [auth J],
KA [auth G],
KB [auth C],
KC [auth E],
KD [auth H],
KE [auth J],
LA [auth G],
LB [auth C],
LC [auth E],
LD [auth H],
LE [auth J],
LF [auth L],
M [auth A],
MA [auth G],
MC [auth E],
MD [auth H],
ME [auth J],
MF [auth L],
N [auth A],
NA [auth G],
NC [auth E],
ND [auth H],
NE [auth J],
NF [auth L],
O [auth A],
OA [auth B],
OC [auth E],
OD [auth H],
OE [auth J],
OF [auth L],
P [auth A],
PA [auth B],
PB [auth D],
PD [auth H],
PE [auth J],
PF [auth L],
Q [auth A],
QA [auth B],
QB [auth D],
QD [auth H],
QE [auth J],
QF [auth L],
RA [auth B],
RB [auth D],
RE [auth J],
RF [auth L],
SA [auth B],
SB [auth D],
SE [auth J],
SF [auth L],
TA [auth B],
TB [auth D],
TC [auth F],
TF [auth L],
U [auth A],
UA [auth B],
UB [auth D],
UC [auth F],
UD [auth I],
UF [auth L],
V [auth A],
VA [auth B],
VB [auth D],
VC [auth F],
VD [auth I],
VF [auth L],
W [auth A],
WA [auth B],
WB [auth D],
WC [auth F],
WD [auth I],
WE [auth K],
X [auth A],
XA [auth B],
XB [auth D],
XC [auth F],
XD [auth I],
XE [auth K],
Y [auth A],
YA [auth B],
YB [auth D],
YC [auth F],
YD [auth I],
YE [auth K],
Z [auth A],
ZB [auth D],
ZC [auth F],
ZD [auth I],
ZE [auth K]
TETRADECANE
C14 H30
BGHCVCJVXZWKCC-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic OfNRF-2018R1C1B6004447

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-01
    Type: Initial release
  • Version 1.1: 2023-05-03
    Changes: Database references