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 7XOW | pdb_00007xow

Structural insights into human brain gut peptide cholecystokinin receptors


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history. 

Literature

Structural insights into human brain-gut peptide cholecystokinin receptors.

Ding, Y., Zhang, H., Liao, Y.Y., Chen, L.N., Ji, S.Y., Qin, J., Mao, C., Shen, D.D., Lin, L., Wang, H., Zhang, Y., Li, X.M.

(2022) Cell Discov 8: 55-55

  • DOI: https://doi.org/10.1038/s41421-022-00420-3
  • Primary Citation Related Structures: 
    7XOU, 7XOV, 7XOW, 8IA7

  • PubMed Abstract: 

    The intestinal hormone and neuromodulator cholecystokinin (CCK) receptors CCK1R and CCK2R act as a signaling hub in brain-gut axis, mediating digestion, emotion, and memory regulation. CCK receptors exhibit distinct preferences for ligands in different posttranslational modification (PTM) states. CCK1R couples to G s and G q , whereas CCK2R primarily couples to G q . Here we report the cryo-electron microscopy (cryo-EM) structures of CCK1R-G s signaling complexes liganded either by sulfated cholecystokinin octapeptide (CCK-8) or a CCK1R-selective small-molecule SR146131, and CCK2R-G q complexes stabilized by either sulfated CCK-8 or a CCK2R-selective ligand gastrin-17. Our structures reveal a location-conserved yet charge-distinct pocket discriminating the effects of ligand PTM states on receptor subtype preference, the unique pocket topology underlying selectivity of SR146131 and gastrin-17, the conformational changes in receptor activation, and key residues contributing to G protein subtype specificity, providing multiple structural templates for drug design targeting the brain-gut axis.


  • Organizational Affiliation: 
    • Department of Neurobiology and Department of Neurology of Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China.

Macromolecule Content 

  • Total Structure Weight: 166.36 kDa 
  • Atom Count: 8,566 
  • Modeled Residue Count: 1,122 
  • Deposited Residue Count: 1,501 
  • Unique protein chains: 6

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Gastrin/cholecystokinin type B receptorA [auth R]447Homo sapiensMutation(s): 0 
Gene Names: CCKBR, CCKRB
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P32239 (Homo sapiens)
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Go to UniProtKB:  P32239
PHAROS:  P32239
GTEx:  ENSG00000110148 
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UniProt GroupP32239
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1345Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
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Go to UniProtKB:  P62873
PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-270Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens)
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Go to UniProtKB:  P59768
PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
scfv16D [auth E]269Mus musculusMutation(s): 0 
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(q) subunit alphaE [auth A]353Homo sapiensMutation(s): 0 
Gene Names: GNAQ, GAQ
EC: 3.6.5
Membrane Entity: Yes 
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Find proteins for P50148 (Homo sapiens)
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PHAROS:  P50148
GTEx:  ENSG00000156052 
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UniProt GroupP50148
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
GastrinF [auth L]17Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P01350 (Homo sapiens)
Explore P01350 
Go to UniProtKB:  P01350
PHAROS:  P01350
GTEx:  ENSG00000184502 
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UniProt GroupP01350
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Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
TYS
Query on TYS
F [auth L]L-PEPTIDE LINKINGC9 H11 N O6 STYR

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-20
    Type: Initial release
  • Version 1.1: 2024-11-20
    Changes: Data collection, Structure summary
  • Version 1.2: 2025-06-25
    Changes: Data collection