7XHB

Structure of the SecA/SecYE/proOmpA(4Y)-sfGFP complex with ADP


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.33 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of SecA-mediated protein translocation.

Dong, L.Yang, S.Chen, J.Wu, X.Sun, D.Song, C.Li, L.

(2023) Proc Natl Acad Sci U S A 120: e2208070120-e2208070120

  • DOI: https://doi.org/10.1073/pnas.2208070120
  • Primary Citation of Related Structures:  
    7XHA, 7XHB

  • PubMed Abstract: 

    Secretory proteins are cotranslationally or posttranslationally translocated across lipid membranes via a protein-conducting channel named SecY in prokaryotes and Sec61 in eukaryotes. The vast majority of secretory proteins in bacteria are driven through the channel posttranslationally by SecA, a highly conserved ATPase. How a polypeptide chain is moved by SecA through the SecY channel is poorly understood. Here, we report electron cryomicroscopy structures of the active SecA-SecY translocon with a polypeptide substrate. The substrate is captured in different translocation states when clamped by SecA with different nucleotides. Upon binding of an ATP analog, SecA undergoes global conformational changes to push the polypeptide substrate toward the channel in a way similar to how the RecA-like helicases translocate their nucleic acid substrates. The movements of the polypeptide substrates in the SecA-SecY translocon share a similar structural basis to those in the ribosome-SecY complex during cotranslational translocation.


  • Organizational Affiliation

    State Key Laboratory of Membrane Biology, Peking-Tsinghua Center for Life Sciences, School of Life Sciences, Peking University, Beijing 100871, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein translocase subunit SecA778Bacillus subtilis subsp. subtilis str. 168Mutation(s): 0 
Gene Names: secA
EC: 7.4.2.8
Membrane Entity: Yes 
UniProt
Find proteins for P28366 (Bacillus subtilis (strain 168))
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Go to UniProtKB:  P28366
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UniProt GroupP28366
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Protein translocase subunit SecYB [auth Y]430Geobacillus thermodenitrificans NG80-2Mutation(s): 1 
Gene Names: secY
Membrane Entity: Yes 
UniProt
Find proteins for A4IJK8 (Geobacillus thermodenitrificans (strain NG80-2))
Explore A4IJK8 
Go to UniProtKB:  A4IJK8
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UniProt GroupA4IJK8
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Protein translocase subunit SecEC [auth E]60Geobacillus thermodenitrificans NG80-2Mutation(s): 0 
Gene Names: secE
Membrane Entity: Yes 
UniProt
Find proteins for A4IJH4 (Geobacillus thermodenitrificans (strain NG80-2))
Explore A4IJH4 
Go to UniProtKB:  A4IJH4
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UniProt GroupA4IJH4
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Translocating peptideD [auth B]345Escherichia coliMutation(s): 0 
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.33 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31870835

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-11
    Type: Initial release
  • Version 1.1: 2023-01-18
    Changes: Database references