7UKH

Human Kv4.2-KChIP2-DPP6 channel complex in an open state, intracellular region

  • Classification: MEMBRANE PROTEIN
  • Organism(s): Homo sapiens
  • Expression System: Homo sapiens
  • Mutation(s): No 

  • Deposited: 2022-04-01 Released: 2022-06-29 
  • Deposition Author(s): Zhao, H., Dai, Y., Lee, C.H.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.33 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Activation and closed-state inactivation mechanisms of the human voltage-gated K V 4 channel complexes.

Ye, W.Zhao, H.Dai, Y.Wang, Y.Lo, Y.H.Jan, L.Y.Lee, C.H.

(2022) Mol Cell 82: 2427

  • DOI: 10.1016/j.molcel.2022.04.032
  • Primary Citation of Related Structures:  
    7UK5, 7UKC, 7UKD, 7UKE, 7UKF, 7UKG, 7UKH

  • PubMed Abstract: 
  • The voltage-gated ion channel activity depends on both activation (transition from the resting state to the open state) and inactivation. Inactivation is a self-restraint mechanism to limit ion conduction and is as crucial to membrane excitability as activation ...

    The voltage-gated ion channel activity depends on both activation (transition from the resting state to the open state) and inactivation. Inactivation is a self-restraint mechanism to limit ion conduction and is as crucial to membrane excitability as activation. Inactivation can occur when the channel is open or closed. Although open-state inactivation is well understood, the molecular basis of closed-state inactivation has remained elusive. We report cryo-EM structures of human K V 4.2 channel complexes in inactivated, open, and closed states. Closed-state inactivation of K V 4 involves an unprecedented symmetry breakdown for pore closure by only two of the four S4-S5 linkers, distinct from known mechanisms of open-state inactivation. We further capture K V 4 in a putative resting state, revealing how voltage sensor movements control the pore. Moreover, our structures provide insights regarding channel modulation by KChIP2 and DPP6 auxiliary subunits. Our findings elucidate mechanisms of closed-state inactivation and voltage-dependent activation of the K V 4 channel.


    Organizational Affiliation

    Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA. Electronic address: chiahsueh.lee@stjude.org.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Potassium voltage-gated channel subfamily D member 2A, B, C, D524Homo sapiensMutation(s): 0 
Gene Names: KCND2KIAA1044
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NZV8 (Homo sapiens)
Explore Q9NZV8 
Go to UniProtKB:  Q9NZV8
PHAROS:  Q9NZV8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NZV8
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Isoform 2 of Kv channel-interacting protein 2E [auth I],
F [auth J],
G [auth K],
H [auth L]
252Homo sapiensMutation(s): 0 
Gene Names: KCNIP2KCHIP2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NS61 (Homo sapiens)
Explore Q9NS61 
Go to UniProtKB:  Q9NS61
PHAROS:  Q9NS61
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NS61
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN (Subject of Investigation/LOI)
Query on ZN

Download Ideal Coordinates CCD File 
I [auth A],
J [auth B],
K [auth C],
L [auth D]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
CA (Subject of Investigation/LOI)
Query on CA

Download Ideal Coordinates CCD File 
M [auth I],
N [auth I],
O [auth I],
P [auth J],
Q [auth J],
M [auth I],
N [auth I],
O [auth I],
P [auth J],
Q [auth J],
R [auth J],
S [auth K],
T [auth K],
U [auth K],
V [auth L],
W [auth L],
X [auth L]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.33 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM143282

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-29
    Type: Initial release
  • Version 1.1: 2022-07-20
    Changes: Database references