7RCS

Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m43.160


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.191 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Vaccination in a humanized mouse model elicits highly protective PfCSP-targeting anti-malarial antibodies.

Kratochvil, S.Shen, C.H.Lin, Y.C.Xu, K.Nair, U.Da Silva Pereira, L.Tripathi, P.Arnold, J.Chuang, G.Y.Melzi, E.Schon, A.Zhang, B.Dillon, M.Bonilla, B.Flynn, B.J.Kirsch, K.H.Kisalu, N.K.Kiyuka, P.K.Liu, T.Ou, L.Pancera, M.Rawi, R.Reveiz, M.Seignon, K.Wang, L.T.Waring, M.T.Warner, J.Yang, Y.Francica, J.R.Idris, A.H.Seder, R.A.Kwong, P.D.Batista, F.D.

(2021) Immunity 54: 2859

  • DOI: https://doi.org/10.1016/j.immuni.2021.10.017
  • Primary Citation of Related Structures:  
    7LKB, 7LKG, 7RAJ, 7RCS, 7RD3, 7RD4, 7RD9, 7RDA

  • PubMed Abstract: 

    Repeat antigens, such as the Plasmodium falciparum circumsporozoite protein (PfCSP), use both sequence degeneracy and structural diversity to evade the immune response. A few PfCSP-directed antibodies have been identified that are effective at preventing malaria infection, including CIS43, but how these repeat-targeting antibodies might be improved has been unclear. Here, we engineered a humanized mouse model in which B cells expressed inferred human germline CIS43 (iGL-CIS43) B cell receptors and used both vaccination and bioinformatic analysis to obtain variant CIS43 antibodies with improved protective capacity. One such antibody, iGL-CIS43.D3, was significantly more potent than the current best-in-class PfCSP-directed antibody. We found that vaccination with a junctional epitope peptide was more effective than full-length PfCSP at recruiting iGL-CIS43 B cells to germinal centers. Structure-function analysis revealed multiple somatic hypermutations that combinatorically improved protection. This mouse model can thus be used to understand vaccine immunogens and to develop highly potent anti-malarial antibodies.


  • Organizational Affiliation

    The Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
antibody m43.160 heavy chainA [auth H],
C [auth A]
255Mus musculusMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
antibody m43.160 light chainB [auth L],
D [auth B]
220Mus musculusMutation(s): 0 
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  • Reference Sequence

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Circumsporozoite proteinE [auth D],
F [auth C]
15Plasmodium falciparumMutation(s): 0 
UniProt
Find proteins for P02893 (Plasmodium falciparum)
Explore P02893 
Go to UniProtKB:  P02893
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UniProt GroupP02893
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.191 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.768α = 85.8
b = 57.518β = 77.43
c = 74.873γ = 72.64
Software Package:
Software NamePurpose
HKL-2000data scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-15
    Type: Initial release
  • Version 1.1: 2021-12-29
    Changes: Database references
  • Version 1.2: 2023-10-18
    Changes: Data collection, Refinement description